Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Leifsonia
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Leifsonia |
| Species | Leifsonia xyli |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | 20 |
| Temperature range | Mesophilic |
| Habitat | xylem |
| Biotic relationship | Free living |
| Host(s) | Oryza sativa, Zea mays subsp. mays, Cynodon dactylon |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
539259 bp
Thymine Count
542967 bp
Guanine Count
1228610 bp
Cytosine Count
1218057 bp
Genome Length
3528893 bp
Protein-coding Genes
3206 genes
Non-Coding Genes
57 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| protein translocase subunit secd | DI534_00655 | Not Available | Positive | 137313 - 139025 | 59436.9 |
| protein translocase subunit secf | DI534_00660 | Not Available | Positive | 139025 - 140041 | 36176.8 |
| bifunctional (p)ppgpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase | DI534_00665 | Not Available | Positive | 140095 - 142347 | 83438.7 |
| hypothetical protein | DI534_00670 | Not Available | Negative | 142326 - 142883 | 19326.2 |
| duf349 domain-containing protein | DI534_00675 | Not Available | Negative | 142961 - 144139 | 42665.0 |
| peptidylprolyl isomerase | DI534_00680 | Not Available | Negative | 144245 - 145039 | 27233.5 |
| aaa family atpase | DI534_00685 | Not Available | Positive | 145161 - 146540 | 48500.8 |
| 30s ribosomal protein s4 | DI534_00690 | Not Available | Positive | 146751 - 147380 | 23911.2 |
| hypothetical protein | DI534_00695 | Not Available | Positive | 147502 - 147732 | 8210.81 |
| alanine--trna ligase | DI534_00700 | Not Available | Positive | 147800 - 150454 | 94924.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Ratoon stunting disease | Causes | PMC2516522 |
| Ratoon-stunting disease | Causes | PMC2516522 |
