Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Leifsonia
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Leifsonia |
| Species | Leifsonia xyli |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | 20 |
| Temperature range | Mesophilic |
| Habitat | xylem |
| Biotic relationship | Free living |
| Host(s) | Oryza sativa, Zea mays subsp. mays, Cynodon dactylon |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
539259 bp
Thymine Count
542967 bp
Guanine Count
1228610 bp
Cytosine Count
1218057 bp
Genome Length
3528893 bp
Protein-coding Genes
3206 genes
Non-Coding Genes
57 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf305 domain-containing protein | DI534_06890 | Not Available | Positive | 1462772 - 1463386 | 21324.4 |
| copper oxidase | DI534_06895 | Not Available | Positive | 1463471 - 1465003 | 55043.6 |
| ribonucleotide-diphosphate reductase subunit beta | DI534_06900 | Not Available | Positive | 1465233 - 1465313 | 2837.25 |
| hypothetical protein | DI534_06905 | Not Available | Positive | 1465453 - 1465899 | 15543.3 |
| acyl dehydratase | DI534_06910 | Not Available | Positive | 1465896 - 1466318 | 14567.5 |
| udp-n-acetylmuramate dehydrogenase | DI534_06915 | Not Available | Positive | 1466233 - 1467417 | 40508.3 |
| ribokinase | DI534_06920 | Not Available | Positive | 1467660 - 1468547 | 29788.6 |
| dna-binding response regulator | DI534_06925 | Not Available | Negative | 1468788 - 1469414 | 21588.5 |
| sensor histidine kinase | DI534_06930 | Not Available | Negative | 1469411 - 1470583 | 40370.1 |
| abc transporter | DI534_06935 | Not Available | Negative | 1470584 - 1471435 | 30227.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Ratoon stunting disease | Causes | PMC2516522 |
| Ratoon-stunting disease | Causes | PMC2516522 |
