Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Leifsonia
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Leifsonia |
| Species | Leifsonia xyli |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | 20 |
| Temperature range | Mesophilic |
| Habitat | xylem |
| Biotic relationship | Free living |
| Host(s) | Oryza sativa, Zea mays subsp. mays, Cynodon dactylon |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
539259 bp
Thymine Count
542967 bp
Guanine Count
1228610 bp
Cytosine Count
1218057 bp
Genome Length
3528893 bp
Protein-coding Genes
3206 genes
Non-Coding Genes
57 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hit family hydrolase | DI534_00610 | Not Available | Positive | 130881 - 131450 | 20419.2 |
| pyridoxal 5'-phosphate synthase lyase subunit pdxs | DI534_00615 | Not Available | Positive | 131539 - 132456 | 31804.1 |
| pyridoxal 5'-phosphate synthase glutaminase subunit pdxt | DI534_00620 | Not Available | Positive | 132446 - 133054 | 21020.3 |
| hypothetical protein | DI534_00625 | Not Available | Positive | 133095 - 133700 | 20542.0 |
| Ncrna_class:rnase_p_rna | Not Available | Not Available | Positive | 133387 - 133775 | Not Available |
| yebc/pmpr family dna-binding transcriptional regulator | DI534_00630 | Not Available | Positive | 133741 - 134502 | 26917.5 |
| crossover junction endodeoxyribonuclease ruvc | DI534_00635 | Not Available | Positive | 134528 - 135088 | 19042.0 |
| holliday junction branch migration protein ruva | DI534_00640 | Not Available | Positive | 135092 - 135703 | 20653.1 |
| holliday junction branch migration dna helicase ruvb | DI534_00645 | Not Available | Positive | 135700 - 136740 | 37319.9 |
| preprotein translocase subunit yajc | DI534_00650 | Not Available | Positive | 136818 - 137240 | 15507.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Ratoon stunting disease | Causes | PMC2516522 |
| Ratoon-stunting disease | Causes | PMC2516522 |
