Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Leifsonia
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Leifsonia |
| Species | Leifsonia xyli |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | 20 |
| Temperature range | Mesophilic |
| Habitat | xylem |
| Biotic relationship | Free living |
| Host(s) | Oryza sativa, Zea mays subsp. mays, Cynodon dactylon |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
539259 bp
Thymine Count
542967 bp
Guanine Count
1228610 bp
Cytosine Count
1218057 bp
Genome Length
3528893 bp
Protein-coding Genes
3206 genes
Non-Coding Genes
57 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 3-isopropylmalate dehydratase small subunit | DI534_06435 | Not Available | Positive | 1359847 - 1360443 | 22272.4 |
| udp-n-acetylglucosamine 1-carboxyvinyltransferase | DI534_06440 | Not Available | Positive | 1360494 - 1361852 | 48579.7 |
| 1-acyl-sn-glycerol-3-phosphate acyltransferase | DI534_06445 | Not Available | Positive | 1361852 - 1362610 | 28338.6 |
| hypothetical protein | DI534_06450 | Not Available | Negative | 1362653 - 1363414 | 27287.9 |
| glycerol-3-phosphate dehydrogenase | DI534_06455 | Not Available | Positive | 1363556 - 1364599 | 36339.5 |
| d-alanine--d-alanine ligase | DI534_06460 | Not Available | Positive | 1364628 - 1365710 | 38781.6 |
| duf3515 domain-containing protein | DI534_06465 | Not Available | Negative | 1365730 - 1366185 | 15296.4 |
| thiamine-phosphate kinase | DI534_06470 | Not Available | Positive | 1366291 - 1367274 | 32636.8 |
| 16s rrna (guanine(966)-n(2))-methyltransferase rsmd | DI534_06475 | Not Available | Negative | 1367244 - 1367843 | 20518.4 |
| atp-dependent dna helicase recg | DI534_06480 | Not Available | Positive | 1367925 - 1370096 | 77973.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Ratoon stunting disease | Causes | PMC2516522 |
| Ratoon-stunting disease | Causes | PMC2516522 |
