Leifsonia xyli

BacilliNon-motileAerobic

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Micrococcales

Family

Microbacteriaceae

Genus

Leifsonia

Description

Leifsonia xyli is a Gram-positive bacterium that resides in the xylem of host plants. It is characterized by a bacilli shape and is strictly aerobic, requiring oxygen for growth. L. xyli exhibits a mesophilic temperature range with an optimal growth temperature of 20°C. The organism has one replicon and is classified as free-living, indicating it does not rely on a host for its survival outside of its ecological relationships. This bacterium is associated with significant agricultural impacts, particularly on crops such as Oryza sativa (rice), Zea mays subsp. mays (maize), and Cynodon dactylon (Bermudagrass). It is notably linked to ratoon stunting disease, which can adversely affect the yield and health of these plants. The disease manifests itself in reduced growth and productivity, posing a challenge for farmers and crop management. The presence of L. xyli in the xylem suggests a specialized niche adaptation, allowing it to thrive within the vascular systems of its hosts. Its ability to cause ratoon stunting disease indicates that L. xyli plays a role in plant health dynamics and can impact agricultural practices. Understanding its biology and ecological interactions is crucial for developing management strategies to mitigate its effects on crops. The accession QFQR00000000.1 provides a genomic reference for further studies on this organism, enhancing the potential for targeted research and potential biocontrol measures.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderMicrococcales
FamilyMicrobacteriaceae
GenusLeifsonia
SpeciesLeifsonia xyli
StrainNo strain

Profile

Physiology
Gram staining propertiesPositive
ShapeBacilli
MobilityNo
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsAerobic
Optimal temperature20
Temperature rangeMesophilic
Habitatxylem
Biotic relationshipFree living
Host(s)Oryza sativa, Zea mays subsp. mays, Cynodon dactylon
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

MAG: Leifsonia xyli isolate S2_003_000_R2_12

Gene Summary

Adenine Count

539259 bp

Thymine Count

542967 bp

Guanine Count

1228610 bp

Cytosine Count

1218057 bp

Genome Length

3528893 bp

Protein-coding Genes

3206 genes

Non-Coding Genes

57 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
3-isopropylmalate dehydratase small subunitDI534_06435Not AvailablePositive1359847 - 136044322272.4
udp-n-acetylglucosamine 1-carboxyvinyltransferaseDI534_06440Not AvailablePositive1360494 - 136185248579.7
1-acyl-sn-glycerol-3-phosphate acyltransferaseDI534_06445Not AvailablePositive1361852 - 136261028338.6
hypothetical proteinDI534_06450Not AvailableNegative1362653 - 136341427287.9
glycerol-3-phosphate dehydrogenaseDI534_06455Not AvailablePositive1363556 - 136459936339.5
d-alanine--d-alanine ligaseDI534_06460Not AvailablePositive1364628 - 136571038781.6
duf3515 domain-containing proteinDI534_06465Not AvailableNegative1365730 - 136618515296.4
thiamine-phosphate kinaseDI534_06470Not AvailablePositive1366291 - 136727432636.8
16s rrna (guanine(966)-n(2))-methyltransferase rsmdDI534_06475Not AvailableNegative1367244 - 136784320518.4
atp-dependent dna helicase recgDI534_06480Not AvailablePositive1367925 - 137009677973.6

Displaying genes 1271 – 1280 of 3263 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

Health ConditionRelationReference
Ratoon stunting diseaseCausesPMC2516522
Ratoon-stunting diseaseCausesPMC2516522

Displaying health effects 1 – 2 of 2 in total