Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Leifsonia
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Leifsonia |
| Species | Leifsonia xyli |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | 20 |
| Temperature range | Mesophilic |
| Habitat | xylem |
| Biotic relationship | Free living |
| Host(s) | Oryza sativa, Zea mays subsp. mays, Cynodon dactylon |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
539259 bp
Thymine Count
542967 bp
Guanine Count
1228610 bp
Cytosine Count
1218057 bp
Genome Length
3528893 bp
Protein-coding Genes
3206 genes
Non-Coding Genes
57 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| aldo/keto reductase | DI534_05985 | Not Available | Positive | 1257875 - 1258861 | 34859.9 |
| mfs transporter | DI534_05990 | Not Available | Negative | 1258987 - 1260195 | 41902.1 |
| ribonucleoside-diphosphate reductase subunit alpha | DI534_05995 | Not Available | Positive | 1260519 - 1262969 | 91112.8 |
| ribonucleotide-diphosphate reductase subunit beta | DI534_06000 | Not Available | Positive | 1262966 - 1263046 | 2924.33 |
| ribonucleotide-diphosphate reductase subunit beta | DI534_06005 | Not Available | Positive | 1263079 - 1264077 | 38350.5 |
| pyridoxamine 5-phosphate oxidase | DI534_06010 | Not Available | Negative | 1264169 - 1264570 | 14710.2 |
| oxidase | DI534_06015 | Not Available | Positive | 1264641 - 1265294 | 23407.8 |
| atp-dependent rna helicase hrpa | DI534_06020 | Not Available | Negative | 1265300 - 1269130 | 140164.0 |
| atpase | DI534_06025 | Not Available | Negative | 1269169 - 1270152 | 36527.9 |
| transcriptional regulator | DI534_06030 | Not Available | Negative | 1270197 - 1270535 | 12426.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Ratoon stunting disease | Causes | PMC2516522 |
| Ratoon-stunting disease | Causes | PMC2516522 |
