Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Leifsonia
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Leifsonia |
| Species | Leifsonia xyli |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | 20 |
| Temperature range | Mesophilic |
| Habitat | xylem |
| Biotic relationship | Free living |
| Host(s) | Oryza sativa, Zea mays subsp. mays, Cynodon dactylon |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
539259 bp
Thymine Count
542967 bp
Guanine Count
1228610 bp
Cytosine Count
1218057 bp
Genome Length
3528893 bp
Protein-coding Genes
3206 genes
Non-Coding Genes
57 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| alfa-l-rhamnosidase | DI534_05835 | Not Available | Negative | 1223321 - 1225882 | 94117.6 |
| hypothetical protein | DI534_05840 | Not Available | Negative | 1225869 - 1226957 | 41506.8 |
| alpha-l-rhamnosidase | DI534_05845 | Not Available | Negative | 1226954 - 1229332 | 86930.8 |
| 3-beta hydroxysteroid dehydrogenase | DI534_05850 | Not Available | Positive | 1229415 - 1230854 | 52096.7 |
| rhamnulokinase | DI534_05855 | Not Available | Negative | 1230867 - 1232288 | 50080.8 |
| bifunctional rhamnulose-1-phosphate aldolase/short-chain dehydrogenase | DI534_05860 | Not Available | Negative | 1232296 - 1234335 | 71339.5 |
| deaminase | DI534_05865 | Not Available | Negative | 1234501 - 1235142 | 22975.9 |
| l-rhamnose isomerase | DI534_05870 | Not Available | Negative | 1235225 - 1236391 | 42298.8 |
| laci family transcriptional regulator | DI534_05875 | Not Available | Positive | 1236528 - 1237535 | 35576.6 |
| sugar kinase | DI534_05880 | Not Available | Negative | 1237543 - 1238625 | 37023.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Ratoon stunting disease | Causes | PMC2516522 |
| Ratoon-stunting disease | Causes | PMC2516522 |
