Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Leifsonia
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Leifsonia |
| Species | Leifsonia xyli |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | 20 |
| Temperature range | Mesophilic |
| Habitat | xylem |
| Biotic relationship | Free living |
| Host(s) | Oryza sativa, Zea mays subsp. mays, Cynodon dactylon |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
539259 bp
Thymine Count
542967 bp
Guanine Count
1228610 bp
Cytosine Count
1218057 bp
Genome Length
3528893 bp
Protein-coding Genes
3206 genes
Non-Coding Genes
57 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| gnat family n-acetyltransferase | DI534_05320 | Not Available | Positive | 1118494 - 1118880 | 14298.6 |
| phosphate transport system regulatory protein phou | DI534_05325 | Not Available | Negative | 1118922 - 1119575 | 24461.0 |
| two-component sensor histidine kinase | DI534_05330 | Not Available | Positive | 1119774 - 1120931 | 40715.4 |
| dna-binding response regulator | DI534_05335 | Not Available | Positive | 1120928 - 1121611 | 25328.7 |
| hypothetical protein | DI534_05340 | Not Available | Negative | 1121667 - 1122230 | 19258.6 |
| card family transcriptional regulator | DI534_05345 | Not Available | Positive | 1122329 - 1122811 | 17957.6 |
| bifunctional 2-c-methyl-d-erythritol 4-phosphate cytidylyltransferase/2-c-methyl-d-erythritol 2,4-cyclodiphosphate synthase | DI534_05350 | Not Available | Positive | 1123003 - 1124163 | 39313.0 |
| hypothetical protein | DI534_05355 | Not Available | Negative | 1124328 - 1127507 | 107094.0 |
| cysteine--trna ligase | DI534_05360 | Not Available | Positive | 1127642 - 1129051 | 51137.7 |
| 23s rrna (guanosine(2251)-2'-o)-methyltransferase rlmb | DI534_05365 | Not Available | Positive | 1129092 - 1130072 | 34334.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Ratoon stunting disease | Causes | PMC2516522 |
| Ratoon-stunting disease | Causes | PMC2516522 |
