Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Leifsonia
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Leifsonia |
| Species | Leifsonia xyli |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | 20 |
| Temperature range | Mesophilic |
| Habitat | xylem |
| Biotic relationship | Free living |
| Host(s) | Oryza sativa, Zea mays subsp. mays, Cynodon dactylon |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
539259 bp
Thymine Count
542967 bp
Guanine Count
1228610 bp
Cytosine Count
1218057 bp
Genome Length
3528893 bp
Protein-coding Genes
3206 genes
Non-Coding Genes
57 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| antitoxin vapb | DI534_05215 | Not Available | Negative | 1100996 - 1101193 | 7130.6 |
| hypothetical protein | DI534_05220 | Not Available | Positive | 1101467 - 1102012 | 19611.0 |
| hypothetical protein | DI534_05225 | Not Available | Positive | 1102024 - 1102464 | 15947.8 |
| Trna-lys | Not Available | Not Available | Positive | 1103007 - 1103082 | Not Available |
| dna-directed rna polymerase subunit beta | DI534_05240 | Not Available | Positive | 1103139 - 1103771 | 22582.4 |
| phosphate abc transporter atp-binding protein | DI534_05245 | Not Available | Negative | 1104347 - 1105126 | 28477.2 |
| phosphate abc transporter permease ptsa | DI534_05250 | Not Available | Negative | 1105147 - 1106232 | 38054.5 |
| phosphate abc transporter permease subunit pstc | DI534_05255 | Not Available | Negative | 1106232 - 1107170 | 32734.1 |
| phosphate abc transporter substrate-binding protein psts | DI534_05260 | Not Available | Negative | 1107268 - 1108362 | 37035.9 |
| dna mismatch repair protein mutt | DI534_05265 | Not Available | Negative | 1108484 - 1109425 | 33642.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Ratoon stunting disease | Causes | PMC2516522 |
| Ratoon-stunting disease | Causes | PMC2516522 |
