Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Leifsonia
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Leifsonia |
| Species | Leifsonia xyli |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | 20 |
| Temperature range | Mesophilic |
| Habitat | xylem |
| Biotic relationship | Free living |
| Host(s) | Oryza sativa, Zea mays subsp. mays, Cynodon dactylon |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
539259 bp
Thymine Count
542967 bp
Guanine Count
1228610 bp
Cytosine Count
1218057 bp
Genome Length
3528893 bp
Protein-coding Genes
3206 genes
Non-Coding Genes
57 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| sugar kinase | DI534_05060 | Not Available | Positive | 1070780 - 1071931 | 39512.9 |
| abc transporter substrate-binding protein | DI534_05065 | Not Available | Positive | 1072024 - 1073325 | 45591.4 |
| sugar abc transporter permease | DI534_05070 | Not Available | Positive | 1073422 - 1074348 | 34044.4 |
| sugar abc transporter permease | DI534_05075 | Not Available | Positive | 1074429 - 1075187 | 27131.7 |
| beta-n-acetylhexosaminidase | DI534_05080 | Not Available | Positive | 1075184 - 1076593 | 48028.4 |
| sugar kinase | DI534_05085 | Not Available | Positive | 1076590 - 1077516 | 31259.5 |
| glucosamine-6-phosphate deaminase | DI534_05090 | Not Available | Positive | 1077516 - 1078301 | 27434.5 |
| n-acetylglucosamine-6-phosphate deacetylase | DI534_05095 | Not Available | Negative | 1078324 - 1079457 | 38527.7 |
| hypothetical protein | DI534_05100 | Not Available | Negative | 1079467 - 1081578 | 70333.3 |
| formyltetrahydrofolate deformylase | DI534_05105 | Not Available | Negative | 1081759 - 1082610 | 31314.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Ratoon stunting disease | Causes | PMC2516522 |
| Ratoon-stunting disease | Causes | PMC2516522 |
