Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Leifsonia
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Leifsonia |
| Species | Leifsonia xyli |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | 20 |
| Temperature range | Mesophilic |
| Habitat | xylem |
| Biotic relationship | Free living |
| Host(s) | Oryza sativa, Zea mays subsp. mays, Cynodon dactylon |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
539259 bp
Thymine Count
542967 bp
Guanine Count
1228610 bp
Cytosine Count
1218057 bp
Genome Length
3528893 bp
Protein-coding Genes
3206 genes
Non-Coding Genes
57 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DI534_00455 | Not Available | Positive | 96385 - 97494 | 38980.6 |
| duf3071 domain-containing protein | DI534_00460 | Not Available | Negative | 97505 - 98545 | 37395.6 |
| dutpase | DI534_00465 | Not Available | Positive | 98751 - 99041 | 10442.0 |
| duf3093 domain-containing protein | DI534_00470 | Not Available | Negative | 99104 - 99544 | 15688.3 |
| dutp diphosphatase | DI534_00475 | Not Available | Positive | 99560 - 100030 | 16344.4 |
| duf3710 domain-containing protein | DI534_00480 | Not Available | Positive | 100027 - 100647 | 22004.9 |
| duf3159 domain-containing protein | DI534_00485 | Not Available | Positive | 100647 - 101399 | 25765.2 |
| 1-deoxy-d-xylulose-5-phosphate synthase | DI534_00495 | Not Available | Positive | 104472 - 106418 | 70592.7 |
| mfs transporter | DI534_00500 | Not Available | Positive | 106381 - 107964 | 55312.3 |
| 3-hydroxyacyl-coa dehydrogenase | DI534_00505 | Not Available | Negative | 107991 - 110159 | 77378.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Ratoon stunting disease | Causes | PMC2516522 |
| Ratoon-stunting disease | Causes | PMC2516522 |
