Flavobacterium johnsoniae

Gram-negativeRodNon-motileAerobe

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Flavobacteriia

Order

Flavobacteriales

Family

Flavobacteriaceae

Genus

Flavobacterium

Description

Flavobacterium johnsoniae is a Gram-negative, non-motile, rod-shaped bacterium that thrives in various habitats. This organism is classified as an aerobe, requiring oxygen for growth. It possesses flagella, which are typically associated with mobility; however, F. johnsoniae does not exhibit movement. The optimal growth temperature for F. johnsoniae is around 20°C, indicating its mesophilic nature, as it can grow within a temperature range suitable for moderate warmth. This bacterium is characterized by having a single replicon and two membranes, which is typical of Gram-negative bacteria. F. johnsoniae is known to have a free-living biotic relationship, meaning it does not rely on a host organism for survival. However, it has been observed in association with various fish species, including catfish and other freshwater fish like Pangasianodon hypophthalmus, Lates calcarifer, Trichopodus pectoralis, and members of the Ictaluridae family. The ecological role of Flavobacterium johnsoniae may be significant in aquatic environments, particularly in relation to its interaction with fish hosts. Its presence in these ecosystems could suggest a role in nutrient cycling or as a contributor to the microbial community structure surrounding freshwater fish species. Understanding its distribution and interactions can provide insights into the dynamics of microbial life in aquatic habitats.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassFlavobacteriia
OrderFlavobacteriales
FamilyFlavobacteriaceae
GenusFlavobacterium
SpeciesFlavobacterium johnsoniae
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Flavobacterium johnsoniae
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperature20
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)catfish, Pangasianodon hypophthalmus, Lates calcarifer
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

MAG: Flavobacterium johnsoniae isolate S2_005_001_R2_26

Gene Summary

Adenine Count

1022784 bp

Thymine Count

1013437 bp

Guanine Count

625170 bp

Cytosine Count

619036 bp

Genome Length

3280522 bp

Protein-coding Genes

0 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
thioredoxin family proteinDI548_11275Not AvailablePositive2247175 - 22473978060.67
rhodanese-like domain-containing proteinDI548_11280Not AvailablePositive2247411 - 224772511811.9
rhodanese-like domain-containing proteinDI548_11285Not AvailablePositive2247968 - 224835114344.2
duf4249 domain-containing proteinDI548_11290Not AvailableNegative2248352 - 224917330738.1
hypothetical proteinDI548_11295Not AvailableNegative2249186 - 225080661707.1
fe-s cluster assembly protein sufbDI548_11300Not AvailablePositive2250807 - 225180236261.9
fe-s cluster assembly atpase sufcDI548_11305Not AvailablePositive2251836 - 225258227507.9
fe-s cluster assembly protein sufdDI548_11310Not AvailablePositive2252703 - 225401949409.8
hypothetical proteinDI548_11315Not AvailableNegative2254076 - 225441712741.0
hypothetical proteinDI548_11320Not AvailableNegative2254418 - 225512125829.4

Displaying genes 2211 – 2220 of 3426 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

63 records
Metabolite IDMetabolite nameStructureCAS number
BASm0002051D-fructoseC6H12O6Chemical structure of D-fructose57-48-7
Average180.1559Da
Monoisotopic180.0633881Da
BASm00055001-octadecanoyl-sn-glycero-3-phosphateC21H41O7PChemical structure of 1-octadecanoyl-sn-glycero-3-phosphateNot available
Average436.5198Da
Monoisotopic436.2589902Da
BASm0014033AmmoniaH3NChemical structure of Ammonia7664-41-7
Average17.0305Da
Monoisotopic17.026549101Da
BASm0014041Oleic acidC18H34O2Chemical structure of Oleic acid112-80-1
Average282.4614Da
Monoisotopic282.255880332Da
BASm0014071ChitinC24H41N3O16Chemical structure of Chitin1398-61-4
Average627.5928Da
Monoisotopic627.248682279Da
BASm0014080MannanC24H42O21Chemical structure of Mannan9036-88-8
Average666.5777Da
Monoisotopic666.221858406Da
BASm00140832-Amino-2-deoxy-D-galactopyranoseC6H13NO5Chemical structure of 2-Amino-2-deoxy-D-galactopyranose7535-00-4
Average179.1711Da
Monoisotopic179.079372531Da
BASm0014084GlycogenC24H42O21Chemical structure of Glycogen9005-79-2
Average666.5777Da
Monoisotopic666.221858406Da
BASm0014085AmylopectinC30H52O26Chemical structure of Amylopectin9037-22-3
Average828.7183Da
Monoisotopic828.274681836Da
BASm0014086Amylose(C12H20O11)nC2H6Chemical structure of Amylose9005-82-7Not available

Displaying 1–10 of 63 metabolites

Health Effects

No health effects information available for this bacterium.