Pedobacter sp. KBW01

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Sphingobacteriia

Order

Sphingobacteriales

Family

Sphingobacteriaceae

Genus

Pedobacter

Description

Pedobacter sp. KBW01 is a bacterial species characterized by the presence of flagella, which suggests that it is motile. The organism has a single replicon, indicating a simple genomic structure that is typical for many bacteria. The genetic information for Pedobacter sp. KBW01 is cataloged under the accession number QAJQ00000000.1, which allows for further exploration of its genomic features and classification within the Pedobacter genus. This genus is known for its role in various ecological niches, often associated with soil and water environments. The motility provided by its flagella may contribute to its ability to navigate through these habitats, potentially aiding in the uptake of nutrients or colonization of specific ecological niches. Understanding the traits of Pedobacter sp. KBW01, particularly its motility and genetic structure, can provide insights into its ecological roles and interactions within microbial communities. The presence of only one replicon may also suggest a streamlined evolutionary path, possibly indicating adaptations to its environment that enhance its survival and function.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassSphingobacteriia
OrderSphingobacteriales
FamilySphingobacteriaceae
GenusPedobacter
SpeciesPedobacter sp. KBW01
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pedobacter sp. KBW01 KBW1_ATCACG_contig_65, whole genome shotgun

Gene Summary

Adenine Count

1952321 bp

Thymine Count

1941447 bp

Guanine Count

1277025 bp

Cytosine Count

1311809 bp

Genome Length

6484038 bp

Protein-coding Genes

5284 genes

Non-Coding Genes

72 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
susc/raga family proteinDBR40_03060Not AvailablePositive705233 - 708505118083.0
ragb/susd family nutrient uptake outer membrane proteinDBR40_03065Not AvailablePositive708516 - 71004556624.4
hybrid sensor histidine kinase/response regulatorDBR40_03070Not AvailableNegative710931 - 714977152497.0
hypothetical proteinDBR40_03075Not AvailablePositive715337 - 718654120541.0
ragb/susd family nutrient uptake outer membrane proteinDBR40_03080Not AvailablePositive718665 - 72042565378.2
chondroitinaseDBR40_03085Not AvailablePositive720697 - 72280578655.2
glucuronyl hydrolaseDBR40_03090Not AvailablePositive722894 - 72407844660.3
hypothetical proteinDBR40_03095Not AvailablePositive724096 - 72532546286.4
5-dehydro-4-deoxy-d-glucuronate isomeraseDBR40_03100Not AvailablePositive725411 - 72625031335.2
2-deoxy-d-gluconate 3-dehydrogenaseDBR40_03105Not AvailablePositive726331 - 72709526945.2

Displaying genes 631 – 640 of 5356 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.