Photorhabdus khanii subsp. guanajuatensis strain MEX20-17

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Morganellaceae

Genus

Photorhabdus

Description

Photorhabdus khanii subsp. guanajuatensis strain MEX20-17 is a Gram-negative bacterium characterized by its rod shape and the presence of flagella, which contributes to its motility. This strain has a single replicon, indicating a streamlined genetic architecture that may be advantageous for its adaptability in various environments. The genomic data for this strain can be accessed through the accession number PUJY00000000.1. Photorhabdus species are known for their symbiotic relationships with nematodes and their role in the insect pathogenic process. This particular subspecies, MEX20-17, may play a significant role in the ecology of its environment, particularly in soil ecosystems where it can influence nutrient cycling and interact with various microbial communities. The flagella can enhance its ability to navigate through soil matrices, potentially aiding in its survival and pathogenicity. Overall, the characteristics of Photorhabdus khanii subsp. guanajuatensis strain MEX20-17 highlight its potential ecological significance, particularly in terms of its interactions with host organisms and its contribution to soil microbiomes. Understanding these traits can provide insights into the ecological roles of pathogenic bacteria in their native habitats.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyMorganellaceae
GenusPhotorhabdus
SpeciesPhotorhabdus khanii
Strainsubsp. guanajuatensis strain MEX20-17

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Photorhabdus khanii subsp. guanajuatensis strain MEX20-17
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Photorhabdus khanii subsp. guanajuatensis strain MEX20-17

Gene Summary

Adenine Count

1557604 bp

Thymine Count

1555256 bp

Guanine Count

1186644 bp

Cytosine Count

1211659 bp

Genome Length

5512522 bp

Protein-coding Genes

4371 genes

Non-Coding Genes

345 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
esce/ysce/ssae family type iii secretion system needle protein co-chaperoneC5467_03530Not AvailablePositive776987 - 7772088239.66
escf/yscf/hrpa family type iii secretion system needle major subunitC5467_03535Not AvailablePositive777192 - 7774469229.12
yscg family type iii secretion proteinC5467_03540Not AvailablePositive777449 - 77780212984.4
yopr family type iii secretion effectorC5467_03545Not AvailablePositive777795 - 77836121672.9
esci/ysci/hrpb family type iii secretion system inner rod proteinC5467_03550Not AvailablePositive778361 - 77869912466.9
escj/yscj/hrcj family type iii secretion inner membrane ring proteinC5467_03555Not AvailablePositive778706 - 77944327275.3
preprotein translocase kC5467_03560Not AvailablePositive779443 - 78006923709.8
hrpe/yscl family type iii secretion apparatus proteinC5467_03565Not AvailablePositive780048 - 78066523350.8
cysteine proteaseC5467_03570Not AvailablePositive780947 - 78188234333.5
tir chaperone family proteinC5467_03575Not AvailablePositive781879 - 78227115064.8

Displaying genes 981 – 990 of 4716 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.