Photorhabdus laumondii subsp. laumondii TTO1

Gram-negativeRodMotileFacultative

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Morganellaceae

Genus

Photorhabdus

Description

**Photorhabdus laumondii subsp. laumondii TTO1** is a Gram-negative, rod-shaped bacterium that exhibits facultative anaerobic respiration, indicating its ability to thrive in both aerobic and anaerobic environments. This subspecies is nonsporulating, which suggests that it does not form spores as a means of survival under adverse conditions. Instead, it is typically associated with hosts, indicating a potential symbiotic or parasitic relationship, although specific interactions are not delineated in the available data. As a member of the genus *Photorhabdus*, this bacterium is known to associate with nematodes, specifically within the context of insect pathogenicity. The facultative nature of its oxygen requirements implies a versatile metabolic capability, enabling it to adapt to varying oxygen levels within its host's environment. This adaptability may play a critical role in its survival and proliferation within host organisms. The ecological significance of *Photorhabdus laumondii subsp. laumondii TTO1* may extend beyond its immediate interactions with hosts; its metabolic versatility might contribute to nutrient cycling within its habitat, particularly in the context of organic matter decomposition or host tissue breakdown. This aspect highlights the potential role of this bacterium in ecosystems where it is present, offering insights into its contributions to microbial community dynamics and nutrient cycles in host-associated environments.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyMorganellaceae
GenusPhotorhabdus
SpeciesPhotorhabdus laumondii
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Photorhabdus laumondii subsp. laumondii TTO1
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipSymbiotic
Host(s)Not Available
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Photorhabdus laumondii subsp. laumondii TTO1

Accession NumberNC_005126.1

Gene Summary

Adenine Count

1626292 bp

Thymine Count

1626366 bp

Guanine Count

1204636 bp

Cytosine Count

1231693 bp

Genome Length

5688987 bp

Protein-coding Genes

4662 genes

Non-Coding Genes

346 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
Ogr/delta transcriptional activatorPLU_RS00045P08762-10251 - 104728230.91
Tail proteinPLU_RS00050P21679-10549 - 1163439809.1
Tail proteinPLU_RS00055Not Available-11631 - 1209517237.7
Tail tape measure proteinPLU_RS00060Not Available-12098 - 1452487735.1
Tail proteinPLU_RS24775Not Available-14517 - 146364466.25
Phage tail assembly proteinPLU_RS00065Not Available-14651 - 1496811421.9
Major tail tube proteinPLU_RS00070P22502-14995 - 1551019107.7
Tail sheath proteinPLU_RS00075Not Available-15521 - 1669342706.0
Tail fiberPLU_RS27535P26700+17111 - 1766220280.5
Tail fiber assembly proteinPLU_RS00085P26699+17678 - 1820820170.7

Displaying genes 1 – 10 of 5008 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

289 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000275keto-D-sorboseC6H12O6Chemical structure of keto-D-sorboseNot available
Average180.1559Da
Monoisotopic180.0633881Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da

Displaying 1–10 of 289 metabolites