Photorhabdus khanii subsp. guanajuatensis strain MEX20-17

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Morganellaceae

Genus

Photorhabdus

Description

Photorhabdus khanii subsp. guanajuatensis strain MEX20-17 is a Gram-negative bacterium characterized by its rod shape and the presence of flagella, which contributes to its motility. This strain has a single replicon, indicating a streamlined genetic architecture that may be advantageous for its adaptability in various environments. The genomic data for this strain can be accessed through the accession number PUJY00000000.1. Photorhabdus species are known for their symbiotic relationships with nematodes and their role in the insect pathogenic process. This particular subspecies, MEX20-17, may play a significant role in the ecology of its environment, particularly in soil ecosystems where it can influence nutrient cycling and interact with various microbial communities. The flagella can enhance its ability to navigate through soil matrices, potentially aiding in its survival and pathogenicity. Overall, the characteristics of Photorhabdus khanii subsp. guanajuatensis strain MEX20-17 highlight its potential ecological significance, particularly in terms of its interactions with host organisms and its contribution to soil microbiomes. Understanding these traits can provide insights into the ecological roles of pathogenic bacteria in their native habitats.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyMorganellaceae
GenusPhotorhabdus
SpeciesPhotorhabdus khanii
Strainsubsp. guanajuatensis strain MEX20-17

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Photorhabdus khanii subsp. guanajuatensis strain MEX20-17
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Photorhabdus khanii subsp. guanajuatensis strain MEX20-17

Gene Summary

Adenine Count

1557604 bp

Thymine Count

1555256 bp

Guanine Count

1186644 bp

Cytosine Count

1211659 bp

Genome Length

5512522 bp

Protein-coding Genes

4371 genes

Non-Coding Genes

345 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
type iii secretion system regulator lcrrC5467_03430Not AvailableNegative758927 - 75935516489.9
escv/yscv/hrcv family type iii secretion system export apparatus proteinC5467_03435Not AvailableNegative759352 - 76146977662.4
type iii secretion proteinC5467_03440Not AvailableNegative761466 - 76179512231.7
yscx family type iii secretion proteinC5467_03445Not AvailableNegative761798 - 76216313433.1
type iii secretion chaperone sycnC5467_03450Not AvailableNegative762160 - 76253114128.2
tyea family type iii secretion system gatekeeper subunitC5467_03455Not AvailableNegative762528 - 76281510874.9
yopn family type iii secretion system gatekeeper subunitC5467_03460Not AvailableNegative762796 - 76366832247.5
escn/yscn/hrcn family type iii secretion system atpaseC5467_03465Not AvailablePositive763993 - 76531848029.2
type iii secretion proteinC5467_03470Not AvailablePositive765315 - 76577618680.1
type iii secretion system needle length determinantC5467_03475Not AvailablePositive765788 - 76717650838.6

Displaying genes 961 – 970 of 4716 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.