Photorhabdus khanii subsp. guanajuatensis strain MEX20-17

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Morganellaceae

Genus

Photorhabdus

Description

Photorhabdus khanii subsp. guanajuatensis strain MEX20-17 is a Gram-negative bacterium characterized by its rod shape and the presence of flagella, which contributes to its motility. This strain has a single replicon, indicating a streamlined genetic architecture that may be advantageous for its adaptability in various environments. The genomic data for this strain can be accessed through the accession number PUJY00000000.1. Photorhabdus species are known for their symbiotic relationships with nematodes and their role in the insect pathogenic process. This particular subspecies, MEX20-17, may play a significant role in the ecology of its environment, particularly in soil ecosystems where it can influence nutrient cycling and interact with various microbial communities. The flagella can enhance its ability to navigate through soil matrices, potentially aiding in its survival and pathogenicity. Overall, the characteristics of Photorhabdus khanii subsp. guanajuatensis strain MEX20-17 highlight its potential ecological significance, particularly in terms of its interactions with host organisms and its contribution to soil microbiomes. Understanding these traits can provide insights into the ecological roles of pathogenic bacteria in their native habitats.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyMorganellaceae
GenusPhotorhabdus
SpeciesPhotorhabdus khanii
Strainsubsp. guanajuatensis strain MEX20-17

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Photorhabdus khanii subsp. guanajuatensis strain MEX20-17
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Photorhabdus khanii subsp. guanajuatensis strain MEX20-17

Gene Summary

Adenine Count

1557604 bp

Thymine Count

1555256 bp

Guanine Count

1186644 bp

Cytosine Count

1211659 bp

Genome Length

5512522 bp

Protein-coding Genes

4371 genes

Non-Coding Genes

345 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
flavodoxin fldaC5467_08455Not AvailableNegative1803452 - 180398219807.0
ribbon-helix-helix protein, copg familyC5467_08460Not AvailableNegative1804155 - 180444211083.3
arac family transcriptional regulatorC5467_08465Not AvailableNegative1804582 - 180555036570.0
type i secretion system permease/atpaseC5467_08470Not AvailableNegative1805736 - 180788080109.3
hlyd family type i secretion periplasmic adaptor subunitC5467_08475Not AvailableNegative1807883 - 180923851454.7
type i secretion system permease/atpaseC5467_08480Not AvailableNegative1809231 - 181133678855.6
peptide chain release factor 1C5467_08485Not AvailablePositive1811683 - 181203312965.6
rtx toxin-activating lysine-acyltransferase rtxcC5467_08490Not AvailablePositive1812055 - 181251617979.7
martx multifunctional-autoprocessing repeats-in-toxin holotoxin rtxaC5467_08495Not AvailablePositive1812546 - 1825190454540.0
martx multifunctional-autoprocessing repeats-in-toxin holotoxin rtxaC5467_08500Not AvailablePositive1825556 - 1837768439106.0

Displaying genes 1811 – 1820 of 4716 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.