Labrys okinawensis strain RP1T

rodaerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Xanthobacteraceae

Genus

Labrys

Description

Labrys okinawensis strain RP1T is a Gram-negative, aerobic bacterium characterized by its rod-shaped morphology. This strain is classified as mesophilic, with an optimal growth temperature of 25°C, indicating a preference for moderate temperature environments. The organism has a single replicon and is non-spore-forming, which suggests that it relies on other mechanisms for survival and reproduction in its ecological niche. As a member of the microbial community, Labrys okinawensis may play a significant role in various ecological processes, particularly in its native environment. Its aerobic nature indicates that it metabolizes oxygen, which could influence the dynamics of nutrient cycling and organic matter decomposition in its habitat. The strain's optimal growth temperature of 25°C aligns with typical conditions found in many terrestrial ecosystems, further suggesting its ecological relevance in such environments. The genomic accession PUEJ00000000.1 provides a reference for further genetic and functional studies of this strain, potentially unveiling its metabolic pathways and ecological interactions. Understanding the characteristics of Labrys okinawensis strain RP1T can contribute to our knowledge of microbial diversity and functionality within its ecosystem.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyXanthobacteraceae
GenusLabrys
SpeciesLabrys okinawensis
Strainstrain RP1T

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperature25
Temperature rangemesophilic
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
Sporulationnon-spore-forming
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Labrys okinawensis strain RP1T NODE_22_length_5655_cov_16.895803,

Gene Summary

Adenine Count

1169800 bp

Thymine Count

1170584 bp

Guanine Count

2091351 bp

Cytosine Count

2076605 bp

Genome Length

6508340 bp

Protein-coding Genes

5835 genes

Non-Coding Genes

56 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
acyl coa:acetate/3-ketoacid coa transferaseC5L14_01350Not AvailablePositive288566 - 29015856806.3
enoyl-coa hydrataseC5L14_01355Not AvailablePositive290158 - 29092827273.8
short-chain dehydrogenase/reductaseC5L14_01360Not AvailableNegative291098 - 29191329067.0
tetr family transcriptional regulatorC5L14_01365Not AvailableNegative292048 - 29262620712.7
efflux rnd transporter periplasmic adaptor subunitC5L14_01370Not AvailablePositive292713 - 29382838403.0
mfs transporterC5L14_01375Not AvailablePositive293825 - 296941113425.0
pyridoxal 4-dehydrogenaseC5L14_01380Not AvailableNegative297109 - 29812537686.9
acyl-coa dehydrogenaseC5L14_01385Not AvailablePositive298285 - 29943041344.9
3-ketoacyl-acp reductaseC5L14_01390Not AvailablePositive299427 - 30020927998.5
dihydrodipicolinate synthase family proteinC5L14_01395Not AvailablePositive300220 - 30136541601.4

Displaying genes 271 – 280 of 5891 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.