Labrys okinawensis strain RP1T

rodaerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Xanthobacteraceae

Genus

Labrys

Description

Labrys okinawensis strain RP1T is a Gram-negative, aerobic bacterium characterized by its rod-shaped morphology. This strain is classified as mesophilic, with an optimal growth temperature of 25°C, indicating a preference for moderate temperature environments. The organism has a single replicon and is non-spore-forming, which suggests that it relies on other mechanisms for survival and reproduction in its ecological niche. As a member of the microbial community, Labrys okinawensis may play a significant role in various ecological processes, particularly in its native environment. Its aerobic nature indicates that it metabolizes oxygen, which could influence the dynamics of nutrient cycling and organic matter decomposition in its habitat. The strain's optimal growth temperature of 25°C aligns with typical conditions found in many terrestrial ecosystems, further suggesting its ecological relevance in such environments. The genomic accession PUEJ00000000.1 provides a reference for further genetic and functional studies of this strain, potentially unveiling its metabolic pathways and ecological interactions. Understanding the characteristics of Labrys okinawensis strain RP1T can contribute to our knowledge of microbial diversity and functionality within its ecosystem.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyXanthobacteraceae
GenusLabrys
SpeciesLabrys okinawensis
Strainstrain RP1T

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperature25
Temperature rangemesophilic
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
Sporulationnon-spore-forming
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Labrys okinawensis strain RP1T NODE_22_length_5655_cov_16.895803,

Gene Summary

Adenine Count

1169800 bp

Thymine Count

1170584 bp

Guanine Count

2091351 bp

Cytosine Count

2076605 bp

Genome Length

6508340 bp

Protein-coding Genes

5835 genes

Non-Coding Genes

56 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
potassium transporter kupC5L14_06460Not AvailablePositive1412923 - 141483968905.7
quaternary ammonium compound-resistance protein sugeC5L14_06465Not AvailableNegative1414908 - 141522811277.4
patatinC5L14_06470Not AvailableNegative1415401 - 141640536729.2
glycine/betaine abc transporter substrate-binding proteinC5L14_06475Not AvailablePositive1416959 - 141790933544.0
choline abc transporter permease subunitC5L14_06480Not AvailablePositive1418132 - 141897430784.0
choline abc transporter atp-binding proteinC5L14_06485Not AvailablePositive1418974 - 142016743958.1
d-alanyl-d-alanine carboxypeptidaseC5L14_06490Not AvailablePositive1420275 - 142168148921.1
hypothetical proteinC5L14_06495Not AvailablePositive1421960 - 142285030218.1
gtp-binding proteinC5L14_06500Not AvailablePositive1422847 - 142386035816.3
laci family transcriptional regulatorC5L14_06505Not AvailableNegative1423885 - 142492837586.6

Displaying genes 1281 – 1290 of 5891 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.