Rathayibacter sp. AY1F3 AY1F3_98

Rod

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Micrococcales

Family

Microbacteriaceae

Genus

Rathayibacter

Description

Rathayibacter sp. AY1F3 is a Gram-positive bacterium characterized by its rod-shaped morphology. This species is notable for having a single replicon, which refers to the presence of one circular chromosome or plasmid in its genetic makeup. The accession number for Rathayibacter sp. AY1F3 is PSVF00000000.1, which serves as a unique identifier in genomic databases. Rathayibacter species are typically associated with plant hosts and can be involved in plant-pathogen interactions. The specific ecological roles and relationships of Rathayibacter sp. AY1F3 remain to be fully understood, but its Gram-positive nature suggests that it may possess certain cell wall characteristics that can influence its interactions with other microorganisms and host plants. The presence of a single replicon may also indicate a streamlined genomic organization, which can be advantageous for the bacterium in adapting to its ecological niche. Such traits could potentially enhance its survival and reproduction in specific environments, particularly in those associated with plant life. Overall, Rathayibacter sp. AY1F3 exemplifies the diverse characteristics of bacteria within the Rathayibacter genus, highlighting its potential significance in ecological and agricultural contexts.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderMicrococcales
FamilyMicrobacteriaceae
GenusRathayibacter
SpeciesRathayibacter sp. AY1F3
StrainAY1F3_98

Profile

Physiology
Gram staining propertiesPositive
ShapeRod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Rathayibacter sp. AY1F3 AY1F3_98, whole genome shotgun sequence.

Gene Summary

Adenine Count

499815 bp

Thymine Count

501553 bp

Guanine Count

1316010 bp

Cytosine Count

1306470 bp

Genome Length

3624054 bp

Protein-coding Genes

3334 genes

Non-Coding Genes

50 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
rna polymerase subunit sigmaC5C39_00995Not AvailableNegative203189 - 20374920590.7
hypothetical proteinC5C39_01000Not AvailableNegative203749 - 20418315050.7
dna-directed rna polymerase subunit betaC5C39_01005Not AvailableNegative204429 - 20505822559.6
Trna-lysNot AvailableNot AvailablePositive205262 - 205337Not Available
hypothetical proteinC5C39_01015Not AvailableNegative205581 - 2057697454.82
hypothetical proteinC5C39_01020Not AvailableNegative206005 - 2062328551.5
duf3072 domain-containing proteinC5C39_01025Not AvailableNegative206327 - 2066089765.69
duf445 domain-containing proteinC5C39_01030Not AvailableNegative206675 - 20794345935.2
aldose epimeraseC5C39_01035Not AvailableNegative207940 - 20889334600.7
deor/glpr transcriptional regulatorC5C39_01040Not AvailableNegative208903 - 20973028491.3

Displaying genes 201 – 210 of 3384 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.