Rathayibacter sp. AY1F3 AY1F3_98

Rod

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Micrococcales

Family

Microbacteriaceae

Genus

Rathayibacter

Description

Rathayibacter sp. AY1F3 is a Gram-positive bacterium characterized by its rod-shaped morphology. This species is notable for having a single replicon, which refers to the presence of one circular chromosome or plasmid in its genetic makeup. The accession number for Rathayibacter sp. AY1F3 is PSVF00000000.1, which serves as a unique identifier in genomic databases. Rathayibacter species are typically associated with plant hosts and can be involved in plant-pathogen interactions. The specific ecological roles and relationships of Rathayibacter sp. AY1F3 remain to be fully understood, but its Gram-positive nature suggests that it may possess certain cell wall characteristics that can influence its interactions with other microorganisms and host plants. The presence of a single replicon may also indicate a streamlined genomic organization, which can be advantageous for the bacterium in adapting to its ecological niche. Such traits could potentially enhance its survival and reproduction in specific environments, particularly in those associated with plant life. Overall, Rathayibacter sp. AY1F3 exemplifies the diverse characteristics of bacteria within the Rathayibacter genus, highlighting its potential significance in ecological and agricultural contexts.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderMicrococcales
FamilyMicrobacteriaceae
GenusRathayibacter
SpeciesRathayibacter sp. AY1F3
StrainAY1F3_98

Profile

Physiology
Gram staining propertiesPositive
ShapeRod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Rathayibacter sp. AY1F3 AY1F3_98, whole genome shotgun sequence.

Gene Summary

Adenine Count

499815 bp

Thymine Count

501553 bp

Guanine Count

1316010 bp

Cytosine Count

1306470 bp

Genome Length

3624054 bp

Protein-coding Genes

3334 genes

Non-Coding Genes

50 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
oxidoreductaseC5C39_05655Not AvailablePositive1193600 - 119457134557.6
oxidoreductaseC5C39_05660Not AvailablePositive1194702 - 119576938174.1
cyclaseC5C39_05665Not AvailableNegative1196038 - 119649317016.7
nitrate reductaseC5C39_05670Not AvailableNegative1196758 - 119808344830.0
hypothetical proteinC5C39_05675Not AvailablePositive1198175 - 119871119085.6
sigma-70 family rna polymerase sigma factorC5C39_05680Not AvailablePositive1198805 - 119934420001.0
hypothetical proteinC5C39_05685Not AvailablePositive1199341 - 119993120051.7
udp-n-acetylmuramoyl-l-alanyl-d-glutamate--2, 6-diaminopimelate ligaseC5C39_05690Not AvailablePositive1200097 - 120162953466.4
aaa family atpaseC5C39_05695Not AvailablePositive1201652 - 120234124911.5
hypothetical proteinC5C39_05700Not AvailableNegative1202472 - 120358136822.9

Displaying genes 1121 – 1130 of 3384 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.