Citrobacter amalonaticus strain S1285

Gram-negativeRodFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Citrobacter

Description

Citrobacter amalonaticus strain S1285 is a Gram-negative, rod-shaped bacterium primarily found in the gut of Homo sapiens. This strain exhibits facultative anaerobic respiration, allowing it to thrive in both oxygen-rich and oxygen-poor environments. The presence of flagella indicates its motility, which may facilitate its interaction with the gut microbiome and contribute to its ecological role. The strain has a single replicon, as evidenced by its genetic makeup, which is cataloged under the accession number PQLX00000000.1. This streamlined genomic structure may play a role in its adaptability and survival within the gut environment, where competition for resources can be intense. Understanding Citrobacter amalonaticus strain S1285 contributes to our knowledge of gut microbiota diversity and its implications for human health. As a member of the gut microbiome, this bacterium may participate in various metabolic processes and interactions that are crucial for maintaining gut health. Its facultative anaerobic nature and motility suggest that it could influence nutrient absorption or interact with other microbial species, thereby impacting the overall balance of gut ecosystems. Further studies could elucidate its specific functions and potential roles in human health and disease.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusCitrobacter
SpeciesCitrobacter amalonaticus
Strainstrain S1285

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Citrobacter amalonaticus strain S1285
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatgut
Biotic relationshipNot Available
Host(s)Homo sapiens
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Citrobacter amalonaticus strain S1285 scaffold34.1, whole genome

Gene Summary

Adenine Count

1324123 bp

Thymine Count

1307767 bp

Guanine Count

1422538 bp

Cytosine Count

1481614 bp

Genome Length

5536114 bp

Protein-coding Genes

5022 genes

Non-Coding Genes

257 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
murein dd-endopeptidase mepmC3430_02205Not AvailableNegative439143 - 44046548960.4
zinc abc transporter substrate-binding proteinC3430_02210Not AvailableNegative440481 - 44144034789.5
zinc abc transporter atp-binding protein znucC3430_02215Not AvailablePositive441504 - 44225927824.2
zinc abc transporter permeaseC3430_02220Not AvailablePositive442256 - 44304127773.4
holliday junction branch migration dna helicase ruvbC3430_02225Not AvailableNegative443085 - 44409537283.2
holliday junction branch migration protein ruvaC3430_02230Not AvailableNegative444104 - 44471522101.0
crossover junction endodeoxyribonuclease ruvcC3430_02235Not AvailableNegative445245 - 44576618792.0
yebc/pmpr family dna-binding transcriptional regulatorC3430_02240Not AvailableNegative445801 - 44654426489.0
dihydroneopterin triphosphate diphosphataseC3430_02245Not AvailableNegative446572 - 44701517004.2
aspartate--trna ligaseC3430_02250Not AvailableNegative447017 - 44878965781.0

Displaying genes 551 – 560 of 5279 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.