Citrobacter amalonaticus strain S1285

Gram-negativeRodFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Citrobacter

Description

Citrobacter amalonaticus strain S1285 is a Gram-negative, rod-shaped bacterium primarily found in the gut of Homo sapiens. This strain exhibits facultative anaerobic respiration, allowing it to thrive in both oxygen-rich and oxygen-poor environments. The presence of flagella indicates its motility, which may facilitate its interaction with the gut microbiome and contribute to its ecological role. The strain has a single replicon, as evidenced by its genetic makeup, which is cataloged under the accession number PQLX00000000.1. This streamlined genomic structure may play a role in its adaptability and survival within the gut environment, where competition for resources can be intense. Understanding Citrobacter amalonaticus strain S1285 contributes to our knowledge of gut microbiota diversity and its implications for human health. As a member of the gut microbiome, this bacterium may participate in various metabolic processes and interactions that are crucial for maintaining gut health. Its facultative anaerobic nature and motility suggest that it could influence nutrient absorption or interact with other microbial species, thereby impacting the overall balance of gut ecosystems. Further studies could elucidate its specific functions and potential roles in human health and disease.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusCitrobacter
SpeciesCitrobacter amalonaticus
Strainstrain S1285

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Citrobacter amalonaticus strain S1285
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatgut
Biotic relationshipNot Available
Host(s)Homo sapiens
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Citrobacter amalonaticus strain S1285 scaffold34.1, whole genome

Gene Summary

Adenine Count

1324123 bp

Thymine Count

1307767 bp

Guanine Count

1422538 bp

Cytosine Count

1481614 bp

Genome Length

5536114 bp

Protein-coding Genes

5022 genes

Non-Coding Genes

257 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
citrate lyase acyl carrier proteinC3430_25335Not AvailableNegative5160999 - 516129810345.6
[citrate (pro-3s)-lyase] ligaseC3430_25340Not AvailableNegative5161295 - 516236239845.7
c4-dicarboxylate abc transporterC3430_25345Not AvailableNegative5162456 - 516375746544.9
hypothetical proteinC3430_25350Not AvailableNegative5163873 - 516467630185.1
gntr family transcriptional regulatorC3430_25355Not AvailablePositive5164816 - 516554127290.3
dna recombination protein rmucC3430_25365Not AvailablePositive5165957 - 516738454616.6
bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase ubieC3430_25370Not AvailablePositive5167479 - 516823428080.8
ubiquinone biosynthesis protein ubijC3430_25375Not AvailablePositive5168248 - 516885322140.7
ubiquinone biosynthesis regulatory protein kinase ubibC3430_25380Not AvailablePositive5168850 - 517049063408.6
sec-independent protein translocase protein tataC3430_25385Not AvailablePositive5170569 - 51708389576.43

Displaying genes 4901 – 4910 of 5279 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.