Citrobacter amalonaticus strain S1285

Gram-negativeRodFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Citrobacter

Description

Citrobacter amalonaticus strain S1285 is a Gram-negative, rod-shaped bacterium primarily found in the gut of Homo sapiens. This strain exhibits facultative anaerobic respiration, allowing it to thrive in both oxygen-rich and oxygen-poor environments. The presence of flagella indicates its motility, which may facilitate its interaction with the gut microbiome and contribute to its ecological role. The strain has a single replicon, as evidenced by its genetic makeup, which is cataloged under the accession number PQLX00000000.1. This streamlined genomic structure may play a role in its adaptability and survival within the gut environment, where competition for resources can be intense. Understanding Citrobacter amalonaticus strain S1285 contributes to our knowledge of gut microbiota diversity and its implications for human health. As a member of the gut microbiome, this bacterium may participate in various metabolic processes and interactions that are crucial for maintaining gut health. Its facultative anaerobic nature and motility suggest that it could influence nutrient absorption or interact with other microbial species, thereby impacting the overall balance of gut ecosystems. Further studies could elucidate its specific functions and potential roles in human health and disease.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusCitrobacter
SpeciesCitrobacter amalonaticus
Strainstrain S1285

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Citrobacter amalonaticus strain S1285
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatgut
Biotic relationshipNot Available
Host(s)Homo sapiens
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Citrobacter amalonaticus strain S1285 scaffold34.1, whole genome

Gene Summary

Adenine Count

1324123 bp

Thymine Count

1307767 bp

Guanine Count

1422538 bp

Cytosine Count

1481614 bp

Genome Length

5536114 bp

Protein-coding Genes

5022 genes

Non-Coding Genes

257 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
type vi secretion system atpase tsshC3430_13730Not AvailableNegative2810506 - 281301092036.7
type vi secretion system baseplate subunit tssgC3430_13735Not AvailableNegative2813001 - 281394835117.3
type vi secretion system baseplate subunit tssfC3430_13740Not AvailableNegative2813912 - 281563364291.7
type vi secretion system baseplate subunit tsseC3430_13745Not AvailableNegative2815653 - 281603314869.0
type vi secretion system tube protein hcpC3430_13750Not AvailableNegative2816033 - 281651817516.9
type vi secretion system contractile sheath large subunitC3430_13755Not AvailableNegative2816537 - 281801855167.6
type vi secretion system contractile sheath small subunitC3430_13760Not AvailableNegative2818036 - 281854819257.9
t6ss protein cts2nC3430_13765Not AvailablePositive2818994 - 281945216671.3
type vi secretion system baseplate subunit tsskC3430_13770Not AvailablePositive2819467 - 282080450812.1
t6ss protein cts2uC3430_13775Not AvailablePositive2820785 - 282153428462.0

Displaying genes 2771 – 2780 of 5279 in total

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.