Trinickia dabaoshanensis strain GIMN1.004

rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Burkholderiaceae

Genus

Trinickia

Description

Trinickia dabaoshanensis strain GIMN1.004 is a Gram-negative, rod-shaped bacterium primarily found in soil environments. This strain is characterized by having a single replicon, which is indicative of its genomic structure. The genomic data for this strain is accessible under the accession number PNYA00000000.1. As a member of the genus Trinickia, T. dabaoshanensis contributes to the microbial diversity of soil ecosystems. The presence of such bacteria in soil is significant, as they may play a role in various ecological functions, including nutrient cycling and organic matter decomposition. The Gram-negative nature of this strain suggests that it possesses an outer membrane, which can influence its interactions with other microorganisms and its resilience to environmental stresses. Understanding the traits of Trinickia dabaoshanensis strain GIMN1.004 can provide insights into the ecological roles that soil bacteria fulfill. Their presence and activities in soil ecosystems are essential for maintaining soil health and fertility, highlighting the importance of studying such microorganisms for agricultural and environmental sustainability.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyBurkholderiaceae
GenusTrinickia
SpeciesTrinickia dabaoshanensis
Strainstrain GIMN1.004

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatsoil
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Trinickia dabaoshanensis strain GIMN1.004

Gene Summary

Adenine Count

1315632 bp

Thymine Count

1289371 bp

Guanine Count

2211357 bp

Cytosine Count

2276870 bp

Genome Length

7093230 bp

Protein-coding Genes

6314 genes

Non-Coding Genes

75 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
nitrate reductase molybdenum cofactor assembly chaperoneC0Z18_00045Not AvailableNegative7211 - 796627173.8
nitrate reductase subunit betaC0Z18_00050Not AvailableNegative7969 - 948956915.0
nitrate reductase subunit alphaC0Z18_00055Not AvailableNegative9486 - 13283140784.0
nitrate/nitrite transporterC0Z18_00060Not AvailableNegative13297 - 1470650085.3
hypothetical proteinC0Z18_00070Not AvailableNegative15258 - 1579420029.6
atp-dependent proteaseC0Z18_00075Not AvailableNegative15787 - 1825290890.5
hypothetical proteinC0Z18_00080Not AvailablePositive18480 - 1889314986.9
rna polymerase subunit sigmaC0Z18_00085Not AvailablePositive19098 - 2033644495.7
s9 family peptidaseC0Z18_00090Not AvailableNegative20423 - 2260979390.2
lysr family transcriptional regulatorC0Z18_00095Not AvailableNegative22725 - 2359731780.5

Displaying genes 31 – 40 of 6389 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.