Trinickia dabaoshanensis strain GIMN1.004

rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Burkholderiaceae

Genus

Trinickia

Description

Trinickia dabaoshanensis strain GIMN1.004 is a Gram-negative, rod-shaped bacterium primarily found in soil environments. This strain is characterized by having a single replicon, which is indicative of its genomic structure. The genomic data for this strain is accessible under the accession number PNYA00000000.1. As a member of the genus Trinickia, T. dabaoshanensis contributes to the microbial diversity of soil ecosystems. The presence of such bacteria in soil is significant, as they may play a role in various ecological functions, including nutrient cycling and organic matter decomposition. The Gram-negative nature of this strain suggests that it possesses an outer membrane, which can influence its interactions with other microorganisms and its resilience to environmental stresses. Understanding the traits of Trinickia dabaoshanensis strain GIMN1.004 can provide insights into the ecological roles that soil bacteria fulfill. Their presence and activities in soil ecosystems are essential for maintaining soil health and fertility, highlighting the importance of studying such microorganisms for agricultural and environmental sustainability.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyBurkholderiaceae
GenusTrinickia
SpeciesTrinickia dabaoshanensis
Strainstrain GIMN1.004

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatsoil
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Trinickia dabaoshanensis strain GIMN1.004

Gene Summary

Adenine Count

1315632 bp

Thymine Count

1289371 bp

Guanine Count

2211357 bp

Cytosine Count

2276870 bp

Genome Length

7093230 bp

Protein-coding Genes

6314 genes

Non-Coding Genes

75 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
competence protein comeC0Z18_13740Not AvailableNegative3028873 - 302922912483.0
adp-glyceromanno-heptose 6-epimeraseC0Z18_13745Not AvailableNegative3029303 - 303029536986.8
d-glycero-beta-d-manno-heptose-7-phosphate kinaseC0Z18_13750Not AvailableNegative3030346 - 303138336976.6
udp-glucose 6-dehydrogenaseC0Z18_13755Not AvailableNegative3031346 - 303275251224.3
lipopolysaccharide assembly protein lapbC0Z18_13760Not AvailableNegative3032904 - 303408243906.5
duf1049 domain-containing proteinC0Z18_13765Not AvailableNegative3034128 - 303442110621.6
integration host factor subunit betaC0Z18_13770Not AvailableNegative3034724 - 303504711863.4
30s ribosomal protein s1C0Z18_13775Not AvailableNegative3035071 - 303678362081.9
(d)cmp kinaseC0Z18_13780Not AvailableNegative3036922 - 303759624089.8
3-phosphoshikimate 1-carboxyvinyltransferaseC0Z18_13785Not AvailableNegative3037616 - 303892046449.0

Displaying genes 2721 – 2730 of 6389 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.