Trinickia dabaoshanensis strain GIMN1.004

rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Burkholderiaceae

Genus

Trinickia

Description

Trinickia dabaoshanensis strain GIMN1.004 is a Gram-negative, rod-shaped bacterium primarily found in soil environments. This strain is characterized by having a single replicon, which is indicative of its genomic structure. The genomic data for this strain is accessible under the accession number PNYA00000000.1. As a member of the genus Trinickia, T. dabaoshanensis contributes to the microbial diversity of soil ecosystems. The presence of such bacteria in soil is significant, as they may play a role in various ecological functions, including nutrient cycling and organic matter decomposition. The Gram-negative nature of this strain suggests that it possesses an outer membrane, which can influence its interactions with other microorganisms and its resilience to environmental stresses. Understanding the traits of Trinickia dabaoshanensis strain GIMN1.004 can provide insights into the ecological roles that soil bacteria fulfill. Their presence and activities in soil ecosystems are essential for maintaining soil health and fertility, highlighting the importance of studying such microorganisms for agricultural and environmental sustainability.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyBurkholderiaceae
GenusTrinickia
SpeciesTrinickia dabaoshanensis
Strainstrain GIMN1.004

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatsoil
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Trinickia dabaoshanensis strain GIMN1.004

Gene Summary

Adenine Count

1315632 bp

Thymine Count

1289371 bp

Guanine Count

2211357 bp

Cytosine Count

2276870 bp

Genome Length

7093230 bp

Protein-coding Genes

6314 genes

Non-Coding Genes

75 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
lipid a biosynthesis lauroyl acyltransferaseC0Z18_11950Not AvailablePositive2659186 - 266007333810.2
diaminopimelate epimeraseC0Z18_11955Not AvailablePositive2660119 - 266098530944.1
duf484 domain-containing proteinC0Z18_11960Not AvailablePositive2661055 - 266180727101.2
tyrosine recombinase xercC0Z18_11965Not AvailablePositive2661835 - 266276433531.3
23s rrna (cytosine(1962)-c(5))-methyltransferase rlmiC0Z18_11970Not AvailablePositive2662828 - 266403043559.9
cobalamin biosynthesis protein cobwC0Z18_11975Not AvailablePositive2664174 - 266525640372.1
rna polymerase-binding protein dksaC0Z18_11980Not AvailablePositive2665719 - 266613816110.2
hypothetical proteinC0Z18_11985Not AvailablePositive2666138 - 26663507943.48
hslu--hslv peptidase proteolytic subunitC0Z18_11990Not AvailablePositive2666486 - 266702218987.8
hslu--hslv peptidase atpase subunitC0Z18_11995Not AvailablePositive2667045 - 266838849737.7

Displaying genes 2381 – 2390 of 6389 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.