Trinickia dabaoshanensis strain GIMN1.004

rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Burkholderiaceae

Genus

Trinickia

Description

Trinickia dabaoshanensis strain GIMN1.004 is a Gram-negative, rod-shaped bacterium primarily found in soil environments. This strain is characterized by having a single replicon, which is indicative of its genomic structure. The genomic data for this strain is accessible under the accession number PNYA00000000.1. As a member of the genus Trinickia, T. dabaoshanensis contributes to the microbial diversity of soil ecosystems. The presence of such bacteria in soil is significant, as they may play a role in various ecological functions, including nutrient cycling and organic matter decomposition. The Gram-negative nature of this strain suggests that it possesses an outer membrane, which can influence its interactions with other microorganisms and its resilience to environmental stresses. Understanding the traits of Trinickia dabaoshanensis strain GIMN1.004 can provide insights into the ecological roles that soil bacteria fulfill. Their presence and activities in soil ecosystems are essential for maintaining soil health and fertility, highlighting the importance of studying such microorganisms for agricultural and environmental sustainability.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyBurkholderiaceae
GenusTrinickia
SpeciesTrinickia dabaoshanensis
Strainstrain GIMN1.004

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatsoil
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Trinickia dabaoshanensis strain GIMN1.004

Gene Summary

Adenine Count

1315632 bp

Thymine Count

1289371 bp

Guanine Count

2211357 bp

Cytosine Count

2276870 bp

Genome Length

7093230 bp

Protein-coding Genes

6314 genes

Non-Coding Genes

75 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
phosphohydrolaseC0Z18_08085Not AvailableNegative1812859 - 181341920403.1
phosphonoacetaldehyde dehydrogenaseC0Z18_08090Not AvailableNegative1813424 - 181488753126.6
phosphonoacetate hydrolaseC0Z18_08095Not AvailableNegative1814884 - 181617946266.0
phosphonate utilization associated transcriptional regulatorC0Z18_08100Not AvailableNegative1816163 - 181689126343.2
2-aminoethylphosphonate abc transport system, membrane component phnvC0Z18_08105Not AvailableNegative1816980 - 181787630750.2
2-aminoethylphosphonate abc transporter permease subunitC0Z18_08110Not AvailableNegative1817888 - 181882633135.2
2-aminoethylphosphonate abc transport system atp-binding subunit phntC0Z18_08115Not AvailableNegative1818792 - 181988939298.6
2-aminoethylphosphonate abc transporter substrate-binding proteinC0Z18_08120Not AvailableNegative1819929 - 182101738641.3
2-aminoethylphosphonate--pyruvate transaminaseC0Z18_08125Not AvailablePositive1821370 - 182247939355.9
deor/glpr transcriptional regulatorC0Z18_08130Not AvailableNegative1822496 - 182325127045.4

Displaying genes 1611 – 1620 of 6389 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.