Trinickia dabaoshanensis strain GIMN1.004

rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Burkholderiaceae

Genus

Trinickia

Description

Trinickia dabaoshanensis strain GIMN1.004 is a Gram-negative, rod-shaped bacterium primarily found in soil environments. This strain is characterized by having a single replicon, which is indicative of its genomic structure. The genomic data for this strain is accessible under the accession number PNYA00000000.1. As a member of the genus Trinickia, T. dabaoshanensis contributes to the microbial diversity of soil ecosystems. The presence of such bacteria in soil is significant, as they may play a role in various ecological functions, including nutrient cycling and organic matter decomposition. The Gram-negative nature of this strain suggests that it possesses an outer membrane, which can influence its interactions with other microorganisms and its resilience to environmental stresses. Understanding the traits of Trinickia dabaoshanensis strain GIMN1.004 can provide insights into the ecological roles that soil bacteria fulfill. Their presence and activities in soil ecosystems are essential for maintaining soil health and fertility, highlighting the importance of studying such microorganisms for agricultural and environmental sustainability.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyBurkholderiaceae
GenusTrinickia
SpeciesTrinickia dabaoshanensis
Strainstrain GIMN1.004

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatsoil
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Trinickia dabaoshanensis strain GIMN1.004

Gene Summary

Adenine Count

1315632 bp

Thymine Count

1289371 bp

Guanine Count

2211357 bp

Cytosine Count

2276870 bp

Genome Length

7093230 bp

Protein-coding Genes

6314 genes

Non-Coding Genes

75 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hrpe/yscl family type iii secretion apparatus proteinC0Z18_05885Not AvailableNegative1297470 - 129822227179.9
hypothetical proteinC0Z18_05890Not AvailableNegative1298207 - 129889624495.2
escj/yscj/hrcj family type iii secretion inner membrane ring proteinC0Z18_05895Not AvailableNegative1298893 - 129968728191.1
hypothetical proteinC0Z18_05900Not AvailableNegative1299699 - 130011514348.9
hypothetical proteinC0Z18_05905Not AvailableNegative1300125 - 130087428221.0
escu/yscu/hrcu family type iii secretion system export apparatus switch proteinC0Z18_05910Not AvailablePositive1300873 - 130198840145.2
escv/yscv/hrcv family type iii secretion system export apparatus proteinC0Z18_05915Not AvailablePositive1301985 - 130404572993.8
hypothetical proteinC0Z18_05920Not AvailablePositive1304063 - 130481225585.6
hypothetical proteinC0Z18_05925Not AvailablePositive1304831 - 130590137934.8
escr/yscr/hrcr family type iii secretion system export apparatus proteinC0Z18_05930Not AvailablePositive1305885 - 130653223471.4

Displaying genes 1181 – 1190 of 6389 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.