Trinickia dabaoshanensis strain GIMN1.004

rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Burkholderiaceae

Genus

Trinickia

Description

Trinickia dabaoshanensis strain GIMN1.004 is a Gram-negative, rod-shaped bacterium primarily found in soil environments. This strain is characterized by having a single replicon, which is indicative of its genomic structure. The genomic data for this strain is accessible under the accession number PNYA00000000.1. As a member of the genus Trinickia, T. dabaoshanensis contributes to the microbial diversity of soil ecosystems. The presence of such bacteria in soil is significant, as they may play a role in various ecological functions, including nutrient cycling and organic matter decomposition. The Gram-negative nature of this strain suggests that it possesses an outer membrane, which can influence its interactions with other microorganisms and its resilience to environmental stresses. Understanding the traits of Trinickia dabaoshanensis strain GIMN1.004 can provide insights into the ecological roles that soil bacteria fulfill. Their presence and activities in soil ecosystems are essential for maintaining soil health and fertility, highlighting the importance of studying such microorganisms for agricultural and environmental sustainability.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyBurkholderiaceae
GenusTrinickia
SpeciesTrinickia dabaoshanensis
Strainstrain GIMN1.004

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatsoil
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Trinickia dabaoshanensis strain GIMN1.004

Gene Summary

Adenine Count

1315632 bp

Thymine Count

1289371 bp

Guanine Count

2211357 bp

Cytosine Count

2276870 bp

Genome Length

7093230 bp

Protein-coding Genes

6314 genes

Non-Coding Genes

75 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
sarcosine oxidase subunit alphaC0Z18_05570Not AvailableNegative1220071 - 1223097109075.0
sarcosine oxidase subunit deltaC0Z18_05575Not AvailableNegative1223099 - 122338911055.9
sarcosine oxidase subunit betaC0Z18_05580Not AvailableNegative1223416 - 122466045254.9
l-serine ammonia-lyaseC0Z18_05585Not AvailableNegative1224684 - 122606949056.0
arac family transcriptional regulatorC0Z18_05590Not AvailablePositive1226341 - 122741139174.2
glycine/betaine abc transporter substrate-binding proteinC0Z18_05595Not AvailableNegative1227842 - 122879234329.2
arac family transcriptional regulatorC0Z18_05600Not AvailableNegative1228886 - 122987236739.4
choline abc transporter permease subunitC0Z18_05605Not AvailableNegative1229889 - 123079732733.0
glycine betaine/l-proline abc transporter atp-binding proteinC0Z18_05610Not AvailableNegative1230790 - 123195941934.1
choline dehydrogenaseC0Z18_05615Not AvailablePositive1232301 - 123322432249.2

Displaying genes 1121 – 1130 of 6389 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.