Pseudobutyrivibrio ruminis strain JK626

Gram-positiveMotileAnaerobe

Kingdom

Bacillati

Phylum

Bacillota

Class

Clostridia

Order

Lachnospirales

Family

Lachnospiraceae

Genus

Pseudobutyrivibrio

Description

Pseudobutyrivibrio ruminis strain JK626 is a Gram-positive anaerobic bacterium that resides in the intestinal microflora of animals, specifically within the digestive systems of Bos (cattle) and Ovis aries (sheep). This strain is classified as a chemoheterotroph, deriving its energy from organic compounds, which is typical for bacteria inhabiting the gut environment where diverse nutrients are available. This organism is motile, possessing flagella, which may facilitate its movement within the viscous intestinal environment. Pseudobutyrivibrio ruminis strain JK626 thrives at an optimal temperature of 39°C and falls within the mesophilic temperature range, indicating its adaptation to the warm conditions often found in animal intestines. Notably, this strain does not form spores, which could suggest a reliance on stable environments provided by its host. With a singular replicon, the genomic simplicity may reflect a streamlined adaptation to its specific ecological niche. The presence of Pseudobutyrivibrio ruminis in the intestines of ruminants plays a significant role in the fermentation processes associated with the digestion of complex carbohydrates, contributing to the overall health and metabolic efficiency of its hosts. Understanding the characteristics of this strain can provide insights into its contributions to the gut microbiome, particularly in relation to energy extraction and nutrient cycling within ruminant digestive systems.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassClostridia
OrderLachnospirales
FamilyLachnospiraceae
GenusPseudobutyrivibrio
SpeciesPseudobutyrivibrio ruminis
Strainstrain JK626

Profile

Physiology
Gram staining propertiesPositive
ShapeNot Available
MobilityYes
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperature39
Temperature rangeMesophilic
HabitatAnimal intestinal microflora
Biotic relationshipNot Available
Host(s)Bos, Metazoa, Ovis aries
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceChemoheterotroph
PathogenicityNot Available

Genome Summary

Pseudobutyrivibrio ruminis strain JK626 contig000108, whole genome

Gene Summary

Adenine Count

964534 bp

Thymine Count

967011 bp

Guanine Count

613369 bp

Cytosine Count

602264 bp

Genome Length

3147178 bp

Protein-coding Genes

2882 genes

Non-Coding Genes

76 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
sodium ion-translocating decarboxylase subunit betaCSX01_06435Not AvailablePositive1379109 - 138025739927.1
oxaloacetate decarboxylaseCSX01_06440Not AvailablePositive1380271 - 138168952951.6
murr/rpir family transcriptional regulatorCSX01_06445Not AvailablePositive1381778 - 138269233904.5
aminoacetone oxidase family fad-binding enzymeCSX01_06450Not AvailablePositive1382692 - 138392144551.0
(d)cmp kinaseCSX01_06455Not AvailablePositive1383942 - 138460123765.4
4-hydroxy-3-methylbut-2-enyl diphosphate reductaseCSX01_06460Not AvailablePositive1384629 - 138547431223.1
30s ribosomal protein s1CSX01_06465Not AvailablePositive1385462 - 138658040750.5
chemotaxis protein cherCSX01_06470Not AvailablePositive1386764 - 138753729952.0
hypothetical proteinCSX01_06475Not AvailableNegative1387613 - 138867441841.0
electron transport complex subunit rsxcCSX01_06480Not AvailablePositive1388863 - 139018247343.6

Displaying genes 1281 – 1290 of 2958 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.