Pseudobutyrivibrio ruminis strain JK626

Gram-positiveMotileAnaerobe

Kingdom

Bacillati

Phylum

Bacillota

Class

Clostridia

Order

Lachnospirales

Family

Lachnospiraceae

Genus

Pseudobutyrivibrio

Description

Pseudobutyrivibrio ruminis strain JK626 is a Gram-positive anaerobic bacterium that resides in the intestinal microflora of animals, specifically within the digestive systems of Bos (cattle) and Ovis aries (sheep). This strain is classified as a chemoheterotroph, deriving its energy from organic compounds, which is typical for bacteria inhabiting the gut environment where diverse nutrients are available. This organism is motile, possessing flagella, which may facilitate its movement within the viscous intestinal environment. Pseudobutyrivibrio ruminis strain JK626 thrives at an optimal temperature of 39°C and falls within the mesophilic temperature range, indicating its adaptation to the warm conditions often found in animal intestines. Notably, this strain does not form spores, which could suggest a reliance on stable environments provided by its host. With a singular replicon, the genomic simplicity may reflect a streamlined adaptation to its specific ecological niche. The presence of Pseudobutyrivibrio ruminis in the intestines of ruminants plays a significant role in the fermentation processes associated with the digestion of complex carbohydrates, contributing to the overall health and metabolic efficiency of its hosts. Understanding the characteristics of this strain can provide insights into its contributions to the gut microbiome, particularly in relation to energy extraction and nutrient cycling within ruminant digestive systems.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassClostridia
OrderLachnospirales
FamilyLachnospiraceae
GenusPseudobutyrivibrio
SpeciesPseudobutyrivibrio ruminis
Strainstrain JK626

Profile

Physiology
Gram staining propertiesPositive
ShapeNot Available
MobilityYes
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperature39
Temperature rangeMesophilic
HabitatAnimal intestinal microflora
Biotic relationshipNot Available
Host(s)Bos, Metazoa, Ovis aries
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceChemoheterotroph
PathogenicityNot Available

Genome Summary

Pseudobutyrivibrio ruminis strain JK626 contig000108, whole genome

Gene Summary

Adenine Count

964534 bp

Thymine Count

967011 bp

Guanine Count

613369 bp

Cytosine Count

602264 bp

Genome Length

3147178 bp

Protein-coding Genes

2882 genes

Non-Coding Genes

76 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
ketoacyl reductaseCSX01_05535Not AvailablePositive1187823 - 118859027991.7
5'/3'-nucleotidase sureCSX01_05540Not AvailablePositive1188624 - 118934026056.4
asp23/gls24 family envelope stress response proteinCSX01_05545Not AvailablePositive1189379 - 118975613091.1
transcription antitermination factor nusbCSX01_05550Not AvailablePositive1189867 - 119028915796.8
exodeoxyribonuclease vii large subunitCSX01_05555Not AvailablePositive1190289 - 119149444089.9
exodeoxyribonuclease vii small subunitCSX01_05560Not AvailablePositive1191518 - 11917428272.57
farnesyl-diphosphate synthaseCSX01_05565Not AvailablePositive1191744 - 119264032965.6
1-deoxy-d-xylulose-5-phosphate synthaseCSX01_05570Not AvailablePositive1192649 - 119451768626.8
tlya family rrna (cytidine-2'-o)-methyltransferaseCSX01_05575Not AvailablePositive1194536 - 119533329114.2
nad(+) kinaseCSX01_05580Not AvailablePositive1195333 - 119617830983.1

Displaying genes 1101 – 1110 of 2958 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.