Rhizobium tubonense strain CCBAU 85046

rodaerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Rhizobiaceae

Genus

Arminella

Description

Rhizobium tubonense strain CCBAU 85046 is a Gram-negative, aerobic bacterium characterized by its rod shape. It thrives at an optimal temperature of 29°C, indicating a mesophilic nature, which allows it to grow effectively within a specific temperature range suitable for many soil and root environments. This strain is noted for possessing a single replicon, a feature that may contribute to its genetic stability and adaptability in various ecological niches. Additionally, it is a non-spore-forming organism, suggesting that it relies on vegetative reproduction for propagation rather than forming spores, which can be an advantage in stable environments where conditions are favorable for growth. The accession number for further research on Rhizobium tubonense strain CCBAU 85046 is PCDP00000000.1, which provides a reference point for genetic and phenotypic studies. From a biological and ecological perspective, the traits of Rhizobium tubonense strain CCBAU 85046 suggest its potential role in symbiotic relationships, particularly in nitrogen fixation within legume roots. The aerobic nature and mesophilic growth conditions indicate that this strain could play a significant part in maintaining soil fertility and supporting plant growth in its native habitats.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyRhizobiaceae
GenusArminella
SpeciesArminella tubonensis
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperature29
Temperature rangemesophilic
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
Sporulationnon-spore-forming
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Rhizobium tubonense strain CCBAU 85046

Gene Summary

Adenine Count

1338254 bp

Thymine Count

1325510 bp

Guanine Count

1929597 bp

Cytosine Count

1947151 bp

Genome Length

6540512 bp

Protein-coding Genes

6051 genes

Non-Coding Genes

63 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
phosphate abc transporter, permease protein pstaCPY51_01005Not AvailableNegative195132 - 19598329724.4
phosphate abc transporter permease subunit pstcCPY51_01010Not AvailableNegative195995 - 19696634378.4
phosphate abc transporter substrate-binding protein pstsCPY51_01015Not AvailableNegative197038 - 19806336294.0
cupinCPY51_01020Not AvailableNegative198341 - 19868512881.1
o-acetylhomoserine aminocarboxypropyltransferaseCPY51_01025Not AvailableNegative198736 - 20001945897.7
coa-binding proteinCPY51_01030Not AvailableNegative200150 - 20058115527.9
hypothetical proteinCPY51_01035Not AvailablePositive200693 - 20101912269.0
hypothetical proteinCPY51_01040Not AvailablePositive201424 - 20226029324.8
50s ribosomal protein l13CPY51_01045Not AvailablePositive202508 - 20297217321.9
30s ribosomal protein s9CPY51_01050Not AvailablePositive202975 - 20344216787.6

Displaying genes 221 – 230 of 6114 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

139 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000272(E)-4-coumarateC9H7O3Chemical structure of (E)-4-coumarateNot available
Average163.1501Da
Monoisotopic163.0395191Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000400(R)-10-hydroxyoctadecanoateC18H35O3Chemical structure of (R)-10-hydroxyoctadecanoateNot available
Average299.476Da
Monoisotopic299.2591686Da
BASm00006473-hydroxypropanoateC3H5O3Chemical structure of 3-hydroxypropanoateNot available
Average89.071Da
Monoisotopic89.0244176Da
BASm00007164-methylsulfanyl-2-oxobutanoateC5H7O3SChemical structure of 4-methylsulfanyl-2-oxobutanoateNot available
Average147.17Da
Monoisotopic147.012138839Da
BASm0000908propanoateC3H5O2Chemical structure of propanoateNot available
Average73.072Da
Monoisotopic73.029502981Da

Displaying 1–10 of 139 metabolites

Health Effects

No health effects information available for this bacterium.