Pseudobutyrivibrio ruminis DSM 9787

Gram-positiveMotileAnaerobe

Kingdom

Bacillati

Phylum

Bacillota

Class

Clostridia

Order

Lachnospirales

Family

Lachnospiraceae

Genus

Pseudobutyrivibrio

Description

Pseudobutyrivibrio ruminis DSM 9787 is a Gram-positive, anaerobic bacterium that is part of the intestinal microflora in animals. As a chemoheterotroph, it derives energy from organic compounds, which aligns with its ecological role in the gut environment where it contributes to the fermentation of dietary fibers and other nutrients. This species has a mesophilic temperature range, with an optimal growth temperature of 39°C, indicating that it thrives in warm environments typical of the animal intestinal tract. Pseudobutyrivibrio ruminis possesses mobility, facilitated by the presence of flagella, which likely aids in its colonization and interaction within the complex microbial communities of the gut. Notably, Pseudobutyrivibrio ruminis is nonsporulating and possesses a single replicon, suggesting a relatively simple genetic organization. The lack of sporulation indicates that this bacterium relies on its anaerobic environment for survival and reproduction rather than developing spores as a means to withstand adverse conditions. In terms of ecological insight, the presence of Pseudobutyrivibrio ruminis within the gut microbiota underscores its potential role in maintaining gut health and contributing to the fermentation processes that produce beneficial short-chain fatty acids (SCFAs). These SCFAs are important for host energy metabolism and overall gut homeostasis, highlighting the significance of this bacterium in the symbiotic relationship between animals and their gut microbiota.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassClostridia
OrderLachnospirales
FamilyLachnospiraceae
GenusPseudobutyrivibrio
SpeciesPseudobutyrivibrio ruminis
StrainDSM 9787

Profile

Physiology
Gram staining propertiesPositive
ShapeNot Available
MobilityYes
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperature39
Temperature rangeMesophilic
HabitatAnimal intestinal microflora
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceChemoheterotroph
PathogenicityNot Available

Genome Summary

Pseudobutyrivibrio ruminis DSM 9787 genome assembly, contig:

Gene Summary

Adenine Count

905383 bp

Thymine Count

941599 bp

Guanine Count

563383 bp

Cytosine Count

610013 bp

Genome Length

3020378 bp

Protein-coding Genes

2726 genes

Non-Coding Genes

69 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
large subunit ribosomal protein l3SAMN02910411_0254Not AvailablePositive2711505 - 271218824449.7
lsu ribosomal protein l4pSAMN02910411_0255Not AvailablePositive2712218 - 271283822740.4
large subunit ribosomal protein l23SAMN02910411_0256Not AvailablePositive2712838 - 271313711036.6
large subunit ribosomal protein l2SAMN02910411_0257Not AvailablePositive2713219 - 271406130402.2
ssu ribosomal protein s19pSAMN02910411_0258Not AvailablePositive2714073 - 271435410379.6
large subunit ribosomal protein l22SAMN02910411_0259Not AvailablePositive2714377 - 271476614619.8
small subunit ribosomal protein s3SAMN02910411_0260Not AvailablePositive2714778 - 271543724237.3
large subunit ribosomal protein l16SAMN02910411_0261Not AvailablePositive2715439 - 271586715787.4
large subunit ribosomal protein l29SAMN02910411_0262Not AvailablePositive2715867 - 27160737876.39
ssu ribosomal protein s17pSAMN02910411_0263Not AvailablePositive2716113 - 27163679812.07

Displaying genes 2461 – 2470 of 2795 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

235 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da
BASm0001111keto-D-tagaturonateC6H9O7Chemical structure of keto-D-tagaturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0001167triphosphateO10P3Chemical structure of triphosphate14127-68-5
Average252.9153Da
Monoisotopic252.8704308Da
BASm0001639CobinamideC48H72CoN11O8Chemical structure of Cobinamide13497-85-3
Average990.0874Da
Monoisotopic989.4897335Da
BASm0001661Cu(2+)CuChemical structure of Cu(2+)7440-50-8
Average63.546Da
Monoisotopic62.929601079Da
BASm0002143menaquinone-7C46H64O2Chemical structure of menaquinone-7Not available
Average648.9992Da
Monoisotopic648.4906313Da
BASm00022412-demethylmenaquinone-8C50H70O2Chemical structure of 2-demethylmenaquinone-8Not available
Average703.0896Da
Monoisotopic702.5375815Da

Displaying 1–10 of 235 metabolites

Health Effects

No health effects information available for this bacterium.