Pseudobutyrivibrio ruminis DSM 9787

Gram-positiveMotileAnaerobe

Kingdom

Bacillati

Phylum

Bacillota

Class

Clostridia

Order

Lachnospirales

Family

Lachnospiraceae

Genus

Pseudobutyrivibrio

Description

Pseudobutyrivibrio ruminis DSM 9787 is a Gram-positive, anaerobic bacterium that is part of the intestinal microflora in animals. As a chemoheterotroph, it derives energy from organic compounds, which aligns with its ecological role in the gut environment where it contributes to the fermentation of dietary fibers and other nutrients. This species has a mesophilic temperature range, with an optimal growth temperature of 39°C, indicating that it thrives in warm environments typical of the animal intestinal tract. Pseudobutyrivibrio ruminis possesses mobility, facilitated by the presence of flagella, which likely aids in its colonization and interaction within the complex microbial communities of the gut. Notably, Pseudobutyrivibrio ruminis is nonsporulating and possesses a single replicon, suggesting a relatively simple genetic organization. The lack of sporulation indicates that this bacterium relies on its anaerobic environment for survival and reproduction rather than developing spores as a means to withstand adverse conditions. In terms of ecological insight, the presence of Pseudobutyrivibrio ruminis within the gut microbiota underscores its potential role in maintaining gut health and contributing to the fermentation processes that produce beneficial short-chain fatty acids (SCFAs). These SCFAs are important for host energy metabolism and overall gut homeostasis, highlighting the significance of this bacterium in the symbiotic relationship between animals and their gut microbiota.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassClostridia
OrderLachnospirales
FamilyLachnospiraceae
GenusPseudobutyrivibrio
SpeciesPseudobutyrivibrio ruminis
StrainDSM 9787

Profile

Physiology
Gram staining propertiesPositive
ShapeNot Available
MobilityYes
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperature39
Temperature rangeMesophilic
HabitatAnimal intestinal microflora
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceChemoheterotroph
PathogenicityNot Available

Genome Summary

Pseudobutyrivibrio ruminis DSM 9787 genome assembly, contig:

Gene Summary

Adenine Count

905383 bp

Thymine Count

941599 bp

Guanine Count

563383 bp

Cytosine Count

610013 bp

Genome Length

3020378 bp

Protein-coding Genes

2726 genes

Non-Coding Genes

69 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
transketolaseSAMN02910411_1598Not AvailableNegative1067384 - 106821129937.6
protein of unknown functionSAMN02910411_1599Not AvailableNegative1068248 - 106967553752.5
radical sam superfamily enzyme, moaa/nifb/pqqe/skfb familySAMN02910411_1600Not AvailableNegative1069925 - 107135854274.9
zinc dependent phospholipase cSAMN02910411_1601Not AvailablePositive1071631 - 107262938973.4
glycerate dehydrogenaseSAMN02910411_1602Not AvailableNegative1072626 - 107355834752.4
Trna-pheNot AvailableNot AvailablePositive1073623 - 1073695Not Available
Trna-metNot AvailableNot AvailablePositive1073699 - 1073775Not Available
Trna-tyrNot AvailableNot AvailablePositive1073789 - 1073870Not Available
Trna-valNot AvailableNot AvailablePositive1073892 - 1073964Not Available
Trna-aspNot AvailableNot AvailablePositive1073977 - 1074050Not Available

Displaying genes 991 – 1000 of 2795 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

235 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da
BASm0001111keto-D-tagaturonateC6H9O7Chemical structure of keto-D-tagaturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0001167triphosphateO10P3Chemical structure of triphosphate14127-68-5
Average252.9153Da
Monoisotopic252.8704308Da
BASm0001639CobinamideC48H72CoN11O8Chemical structure of Cobinamide13497-85-3
Average990.0874Da
Monoisotopic989.4897335Da
BASm0001661Cu(2+)CuChemical structure of Cu(2+)7440-50-8
Average63.546Da
Monoisotopic62.929601079Da
BASm0002143menaquinone-7C46H64O2Chemical structure of menaquinone-7Not available
Average648.9992Da
Monoisotopic648.4906313Da
BASm00022412-demethylmenaquinone-8C50H70O2Chemical structure of 2-demethylmenaquinone-8Not available
Average703.0896Da
Monoisotopic702.5375815Da

Displaying 1–10 of 235 metabolites

Health Effects

No health effects information available for this bacterium.