Citrobacter portucalensis strain NCTC11104

Gram-negativeRod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Citrobacter

Description

Citrobacter portucalensis strain NCTC11104 is a Gram-negative, rod-shaped bacterium characterized by the presence of flagella, which facilitate motility. This strain possesses a single replicon, indicating a relatively simple genetic organization. The sequence data for this strain can be accessed under the accession number NZ_LR134214.1. As a member of the Citrobacter genus, C. portucalensis is noteworthy for its potential roles in both clinical and environmental contexts. Members of this genus are often found in diverse habitats, including soil, water, and as part of the gut microbiota of various animals, including humans. The presence of flagella in C. portucalensis suggests a potential for active movement within its environment, which may aid in colonization and survival in various ecological niches. Understanding the traits of C. portucalensis, including its rod shape and motility, contributes to a broader comprehension of its ecological roles and potential impacts on health. Its classification as a Gram-negative organism implies specific structural and functional characteristics that may influence its interactions with other microorganisms and host organisms. These traits may also play a role in its pathogenic potential or utility in biotechnological applications, although further studies would be needed to explore these aspects fully.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusCitrobacter
SpeciesCitrobacter portucalensis
Strainstrain NCTC11104

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Citrobacter portucalensis strain NCTC11104
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
Habitathuman gut microbiome
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Citrobacter portucalensis strain NCTC11104 chromosome 1, complete

Gene Summary

Adenine Count

1124805 bp

Thymine Count

1124430 bp

Guanine Count

1224268 bp

Cytosine Count

1221151 bp

Genome Length

4694654 bp

Protein-coding Genes

4179 genes

Non-Coding Genes

336 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
beta-aspartyl-peptidaseEL073_RS02660Not AvailableNegative532271 - 53340439940.6
lysr family transcriptional regulatorEL073_RS02665Not AvailablePositive533553 - 53444634210.3
preprotein translocase subunit secgEL073_RS02670Not AvailablePositive534614 - 53494611357.8
Trna-leuNot AvailableNot AvailablePositive534956 - 535042Not Available
argininosuccinate synthaseEL073_RS02680Not AvailableNegative535239 - 53658249882.3
Trna-metNot AvailableNot AvailablePositive536917 - 536993Not Available
ribosome maturation factor rimpEL073_RS02690Not AvailablePositive537201 - 53765316728.1
transcription termination factor nusaEL073_RS02695Not AvailablePositive537682 - 53916954966.1
translation initiation factor if-2EL073_RS02700Not AvailablePositive539194 - 54188497660.0
30s ribosome-binding factor rbfaEL073_RS02705Not AvailablePositive542034 - 54243815181.4

Displaying genes 791 – 800 of 4515 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

304 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000173(R)-3-Hydroxybutyric acidC4H8O3Chemical structure of (R)-3-Hydroxybutyric acid625-72-3
Average104.0473Da
Monoisotopic104.047344122Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000503L-rhamnoseC6H12O5Chemical structure of L-rhamnose3615-41-6
Average164.1565Da
Monoisotopic164.0684735Da
BASm0000893crotonobetaineC7H13NO2Chemical structure of crotonobetaine927-89-9
Average143.1836Da
Monoisotopic143.0946287Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da
BASm0001035indole-3-pyruvateC11H8NO3Chemical structure of indole-3-pyruvate35656-49-6
Average202.1861Da
Monoisotopic202.0504181Da
BASm0001111keto-D-tagaturonateC6H9O7Chemical structure of keto-D-tagaturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0001167triphosphateO10P3Chemical structure of triphosphate14127-68-5
Average252.9153Da
Monoisotopic252.8704308Da

Displaying 1–10 of 304 metabolites

Health Effects

No health effects information available for this bacterium.