Pseudomonas knackmussii B13

rodaerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas knackmussii B13 is a Gram-negative, aerobic bacterium characterized by its rod-shaped morphology. This species demonstrates optimal growth at a temperature of 32°C and falls within the mesophilic temperature range, indicating its preference for moderate temperature conditions for growth. Genetically, Pseudomonas knackmussii B13 has a single replicon, which may influence its replication and genetic stability. The strain is cataloged under the accession NZ_HG322950.1, providing a reference for researchers interested in its genetic and functional characteristics. Pseudomonas species are often recognized for their metabolic versatility and ecological significance in various environments, particularly in bioremediation processes. The aerobic nature of Pseudomonas knackmussii B13 suggests its potential role in the degradation of organic compounds in oxygen-rich environments, contributing to nutrient cycling and environmental health. The specific traits of this strain may enable it to thrive in ecological niches where organic pollutants are present, highlighting its importance in microbial ecology and potential applications in environmental biotechnology.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas knackmussii
StrainB13

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Pseudomonas knackmussii B13
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperature32
Temperature rangemesophilic
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudomonas knackmussii B13 chromosome I, complete sequence.

Gene Summary

Adenine Count

1063937 bp

Thymine Count

1055439 bp

Guanine Count

2016651 bp

Cytosine Count

2026878 bp

Genome Length

6162905 bp

Protein-coding Genes

5592 genes

Non-Coding Genes

246 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
putrescine utilization regulator ptrrPKB_RS14420Not AvailableNegative3062508 - 306338331925.2
nad-dependent succinate-semialdehyde dehydrogenasePKB_RS14425Not AvailablePositive3063541 - 306492649085.0
glutathione binding-like proteinPKB_RS14430Not AvailablePositive3065022 - 306572626617.8
nad(p)/fad-dependent oxidoreductasePKB_RS14435Not AvailableNegative3065870 - 306718048148.1
s8 family serine peptidasePKB_RS14440Not AvailableNegative3067177 - 306784523191.7
abc transporter atp-binding proteinPKB_RS14445Not AvailableNegative3067838 - 306957163367.9
sigma-54-dependent fis family transcriptional regulatorPKB_RS14450Not AvailableNegative3069571 - 307146968738.7
merr family transcriptional regulatorPKB_RS14455Not AvailablePositive3071716 - 307211415199.4
isovaleryl-coa dehydrogenasePKB_RS14460Not AvailablePositive3072156 - 307331942721.2
carboxyl transferase domain-containing proteinPKB_RS14465Not AvailablePositive3073432 - 307503957200.8

Displaying genes 2981 – 2990 of 5838 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

8 records
Metabolite IDMetabolite nameStructureCAS number
BASm00004283-oxoadipateC6H6O5Chemical structure of 3-oxoadipateNot available
Average158.11Da
Monoisotopic158.022620453Da
BASm00025382-(5-oxo-2,5-dihydrofuran-2-ylidene)acetateC6H3O4Chemical structure of 2-(5-oxo-2,5-dihydrofuran-2-ylidene)acetateNot available
Average139.087Da
Monoisotopic139.0036822Da
BASm0003389NADP(+)C21H25N7O17P3Chemical structure of NADP(+)Not available
Average740.386Da
Monoisotopic740.053624107Da
BASm0017271NADC21H28N7O14P2Chemical structure of NAD53-84-9
Average664.433Da
Monoisotopic664.116946663Da
BASm00174922-MaleylacetateC6H6O5Chemical structure of 2-Maleylacetate24740-88-3
Average158.1088Da
Monoisotopic158.021523302Da
BASm0039655Achromobacter xylosoxidans A8Not availableNot availableNot available
BASm0039977Arthrobacter castelli DSM 16402Not availableNot availableNot available
BASm0040049Pseudomonas knackmussii B13Not availableNot availableNot available

Displaying 1–8 of 8 metabolites

Health Effects

No health effects information available for this bacterium.