Pseudomonas knackmussii B13

rodaerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas knackmussii B13 is a Gram-negative, aerobic bacterium characterized by its rod-shaped morphology. This species demonstrates optimal growth at a temperature of 32°C and falls within the mesophilic temperature range, indicating its preference for moderate temperature conditions for growth. Genetically, Pseudomonas knackmussii B13 has a single replicon, which may influence its replication and genetic stability. The strain is cataloged under the accession NZ_HG322950.1, providing a reference for researchers interested in its genetic and functional characteristics. Pseudomonas species are often recognized for their metabolic versatility and ecological significance in various environments, particularly in bioremediation processes. The aerobic nature of Pseudomonas knackmussii B13 suggests its potential role in the degradation of organic compounds in oxygen-rich environments, contributing to nutrient cycling and environmental health. The specific traits of this strain may enable it to thrive in ecological niches where organic pollutants are present, highlighting its importance in microbial ecology and potential applications in environmental biotechnology.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas knackmussii
StrainB13

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Pseudomonas knackmussii B13
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperature32
Temperature rangemesophilic
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudomonas knackmussii B13 chromosome I, complete sequence.

Gene Summary

Adenine Count

1063937 bp

Thymine Count

1055439 bp

Guanine Count

2016651 bp

Cytosine Count

2026878 bp

Genome Length

6162905 bp

Protein-coding Genes

5592 genes

Non-Coding Genes

246 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
aspartate aminotransferase family proteinPKB_RS11895Not AvailableNegative2522960 - 252432449515.7
gamma-glutamyl-gamma-aminobutyrate hydrolase family proteinPKB_RS11900Not AvailableNegative2524361 - 252513727841.7
helix-turn-helix domain-containing proteinPKB_RS11905Not AvailableNegative2525306 - 252586020625.6
dmt family transporterPKB_RS11910Not AvailableNegative2526420 - 252674611444.5
slac1 anion channel family proteinPKB_RS11915Not AvailableNegative2526811 - 252781235364.9
glxa family transcriptional regulatorPKB_RS11920Not AvailablePositive2527928 - 252888434722.6
gnat family n-acetyltransferasePKB_RS11925Not AvailablePositive2529196 - 252968718404.2
voc family proteinPKB_RS11930Not AvailableNegative2529691 - 253003812828.1
lysr family transcriptional regulatorPKB_RS11935Not AvailableNegative2530100 - 253102334445.4
sdr family oxidoreductasePKB_RS11940Not AvailablePositive2531204 - 253195325404.5

Displaying genes 2481 – 2490 of 5838 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

8 records
Metabolite IDMetabolite nameStructureCAS number
BASm00004283-oxoadipateC6H6O5Chemical structure of 3-oxoadipateNot available
Average158.11Da
Monoisotopic158.022620453Da
BASm00025382-(5-oxo-2,5-dihydrofuran-2-ylidene)acetateC6H3O4Chemical structure of 2-(5-oxo-2,5-dihydrofuran-2-ylidene)acetateNot available
Average139.087Da
Monoisotopic139.0036822Da
BASm0003389NADP(+)C21H25N7O17P3Chemical structure of NADP(+)Not available
Average740.386Da
Monoisotopic740.053624107Da
BASm0017271NADC21H28N7O14P2Chemical structure of NAD53-84-9
Average664.433Da
Monoisotopic664.116946663Da
BASm00174922-MaleylacetateC6H6O5Chemical structure of 2-Maleylacetate24740-88-3
Average158.1088Da
Monoisotopic158.021523302Da
BASm0039655Achromobacter xylosoxidans A8Not availableNot availableNot available
BASm0039977Arthrobacter castelli DSM 16402Not availableNot availableNot available
BASm0040049Pseudomonas knackmussii B13Not availableNot availableNot available

Displaying 1–8 of 8 metabolites

Health Effects

No health effects information available for this bacterium.