Pantoea agglomerans strain CFBP13505

Gram-negativeRodMotileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Erwiniaceae

Genus

Pantoea

Description

Pantoea agglomerans strain CFBP13505 is a Gram-negative, rod-shaped bacterium characterized as a facultative anaerobe and a chemoheterotroph. This strain displays mobility, attributed to the presence of flagella, and thrives optimally at 30°C, falling within the mesophilic temperature range. P. agglomerans is found in multiple habitats, indicating its ecological versatility. It has been identified in association with various hosts, including Homo sapiens, Viridiplantae (plants), Triticum aestivum (wheat), Amphibia, and specific insect species such as Anopheles albimanus and Anopheles sp. This broad host range suggests a significant role in diverse ecological niches, possibly contributing to plant and human interactions. Clinically, Pantoea agglomerans strain CFBP13505 has been associated with various health effects, including peritonitis, septic arthritis, neonatal sepsis, synovitis, and occupational respiratory infections, among others. These associations highlight its potential impact on human health, particularly in immunocompromised individuals or those with underlying conditions. The presence of multiple replicons (four in total) may provide insights into its genetic adaptability and resilience in different environments. Understanding the ecological roles and health implications of P. agglomerans is essential, particularly in agricultural settings where it may interact with crops and livestock, and in clinical contexts where it may pose risks to human health.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyErwiniaceae
GenusPantoea
SpeciesPantoea agglomerans
Strainstrain CFBP13505

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranesNot Available
Image of Pantoea agglomerans strain CFBP13505
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperature30
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipNot Available
Host(s)Homo sapiens, Viridiplantae, Triticum aestivum
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceChemoheterotroph
PathogenicityNot Available

Genome Summary

Pantoea agglomerans strain CFBP13505 plasmid punamed1, complete

Gene Summary

Adenine Count

122810 bp

Thymine Count

123506 bp

Guanine Count

139925 bp

Cytosine Count

140910 bp

Genome Length

527151 bp

Protein-coding Genes

514 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

4

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
integration host factor subunit alphaPagCFBP13505_RS10825Not AvailableNegative2312863 - 231316511469.7
phenylalanine--trna ligase subunit betaPagCFBP13505_RS10830Not AvailableNegative2313170 - 231555786952.5
phenylalanine--trna ligase subunit alphaPagCFBP13505_RS10835Not AvailableNegative2315572 - 231655536797.0
phest operon leader peptide phemPagCFBP13505_RS10840Not AvailableNegative2316703 - 23167471732.1
50s ribosomal protein l20PagCFBP13505_RS10845Not AvailableNegative2316870 - 231722613529.8
50s ribosomal protein l35PagCFBP13505_RS10850Not AvailableNegative2317271 - 23174687311.35
translation initiation factor if-3PagCFBP13505_RS10855Not AvailableNegative2317568 - 231811920868.6
threonine--trna ligasePagCFBP13505_RS10860Not AvailableNegative2318123 - 232005174017.5
ydiy family proteinPagCFBP13505_RS10865Not AvailableNegative2320298 - 232105927525.7
type v toxin-antitoxin system endoribonuclease antitoxin ghosPagCFBP13505_RS10870Not AvailablePositive2321411 - 232172811445.1

Displaying genes 2681 – 2690 of 4621 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

308 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000173(R)-3-Hydroxybutyric acidC4H8O3Chemical structure of (R)-3-Hydroxybutyric acid625-72-3
Average104.0473Da
Monoisotopic104.047344122Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000503L-rhamnoseC6H12O5Chemical structure of L-rhamnose3615-41-6
Average164.1565Da
Monoisotopic164.0684735Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da
BASm0001111keto-D-tagaturonateC6H9O7Chemical structure of keto-D-tagaturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0001167triphosphateO10P3Chemical structure of triphosphate14127-68-5
Average252.9153Da
Monoisotopic252.8704308Da
BASm00011795-hydroxyisourateC5H4N4O4Chemical structure of 5-hydroxyisourateNot available
Average184.1097Da
Monoisotopic184.0232546Da
BASm0001360methanesulfonateCH3O3SChemical structure of methanesulfonate59721-29-8
Average95.09Da
Monoisotopic94.980838711Da

Displaying 1–10 of 308 metabolites

Health Effects

Health ConditionRelationReference
PeritonitisCausesPMC3079607
Neonatal sepsisCausesPMC4560869
Septic arthritisCausesPMC4560869
SynovitisCausesPMC4560869
CholelithiasisCausesPMC4560869
Occupational respiratory infectionsCausesPMC4560869
Skin allergyCausesPMC4560869
PeritonitisCausesPMC4560869
Blood stream infectionCausesPMC4560869
Early onset neonatal sepsisCausesPMC4560869

Displaying health effects 1 – 10 of 12 in total