Pantoea agglomerans strain CFBP13505

Gram-negativeRodMotileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Erwiniaceae

Genus

Pantoea

Description

Pantoea agglomerans strain CFBP13505 is a Gram-negative, rod-shaped bacterium characterized as a facultative anaerobe and a chemoheterotroph. This strain displays mobility, attributed to the presence of flagella, and thrives optimally at 30°C, falling within the mesophilic temperature range. P. agglomerans is found in multiple habitats, indicating its ecological versatility. It has been identified in association with various hosts, including Homo sapiens, Viridiplantae (plants), Triticum aestivum (wheat), Amphibia, and specific insect species such as Anopheles albimanus and Anopheles sp. This broad host range suggests a significant role in diverse ecological niches, possibly contributing to plant and human interactions. Clinically, Pantoea agglomerans strain CFBP13505 has been associated with various health effects, including peritonitis, septic arthritis, neonatal sepsis, synovitis, and occupational respiratory infections, among others. These associations highlight its potential impact on human health, particularly in immunocompromised individuals or those with underlying conditions. The presence of multiple replicons (four in total) may provide insights into its genetic adaptability and resilience in different environments. Understanding the ecological roles and health implications of P. agglomerans is essential, particularly in agricultural settings where it may interact with crops and livestock, and in clinical contexts where it may pose risks to human health.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyErwiniaceae
GenusPantoea
SpeciesPantoea agglomerans
Strainstrain CFBP13505

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranesNot Available
Image of Pantoea agglomerans strain CFBP13505
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperature30
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipNot Available
Host(s)Homo sapiens, Viridiplantae, Triticum aestivum
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceChemoheterotroph
PathogenicityNot Available

Genome Summary

Pantoea agglomerans strain CFBP13505 plasmid punamed1, complete

Gene Summary

Adenine Count

122810 bp

Thymine Count

123506 bp

Guanine Count

139925 bp

Cytosine Count

140910 bp

Genome Length

527151 bp

Protein-coding Genes

514 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

4

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
rnase e specificity factor csrdPagCFBP13505_RS02430Not AvailablePositive497747 - 49969673370.6
rod shape-determining protein mrebPagCFBP13505_RS02435Not AvailablePositive500008 - 50105137002.8
rod shape-determining protein mrecPagCFBP13505_RS02440Not AvailablePositive501200 - 50222236825.5
rod shape-determining protein mredPagCFBP13505_RS02445Not AvailablePositive502219 - 50270718937.1
maf family proteinPagCFBP13505_RS02450Not AvailablePositive502716 - 50330921287.4
ribonuclease gPagCFBP13505_RS02455Not AvailablePositive503299 - 50476854943.4
asma2 domain-containing protein yhdpPagCFBP13505_RS02460Not AvailablePositive504917 - 508747140817.0
metalloprotease tlddPagCFBP13505_RS02465Not AvailablePositive508812 - 51025751117.9
hth-type transcriptional activator aaerPagCFBP13505_RS02470Not AvailableNegative510510 - 51142733841.0
p-hydroxybenzoic acid efflux pump operon protein aaexPagCFBP13505_RS02475Not AvailablePositive511658 - 5118617755.01

Displaying genes 1051 – 1060 of 4621 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

308 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000173(R)-3-Hydroxybutyric acidC4H8O3Chemical structure of (R)-3-Hydroxybutyric acid625-72-3
Average104.0473Da
Monoisotopic104.047344122Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000503L-rhamnoseC6H12O5Chemical structure of L-rhamnose3615-41-6
Average164.1565Da
Monoisotopic164.0684735Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da
BASm0001111keto-D-tagaturonateC6H9O7Chemical structure of keto-D-tagaturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0001167triphosphateO10P3Chemical structure of triphosphate14127-68-5
Average252.9153Da
Monoisotopic252.8704308Da
BASm00011795-hydroxyisourateC5H4N4O4Chemical structure of 5-hydroxyisourateNot available
Average184.1097Da
Monoisotopic184.0232546Da
BASm0001360methanesulfonateCH3O3SChemical structure of methanesulfonate59721-29-8
Average95.09Da
Monoisotopic94.980838711Da

Displaying 1–10 of 308 metabolites

Health Effects

Health ConditionRelationReference
PeritonitisCausesPMC3079607
Neonatal sepsisCausesPMC4560869
Septic arthritisCausesPMC4560869
SynovitisCausesPMC4560869
CholelithiasisCausesPMC4560869
Occupational respiratory infectionsCausesPMC4560869
Skin allergyCausesPMC4560869
PeritonitisCausesPMC4560869
Blood stream infectionCausesPMC4560869
Early onset neonatal sepsisCausesPMC4560869

Displaying health effects 1 – 10 of 12 in total