Trinickia violacea strain DHOD12

rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Burkholderiaceae

Genus

Trinickia

Description

Trinickia violacea strain DHOD12 is a Gram-negative bacterium characterized by its rod shape. It possesses a unique genomic structure, having three replicons, which may contribute to its genetic adaptability and stability. The strain is cataloged under several accessions, including NZ_CP040077.1, NZ_CP040078.1, and NZ_CP040079.1, indicating its availability in genetic databases for further research and analysis. These accessions provide a basis for studying its genomic characteristics and potential applications in various fields. The presence of three replicons in Trinickia violacea strain DHOD12 could be an important factor in its biological functions, potentially influencing its metabolic capabilities and response to environmental stressors. In many bacteria, the number of replicons can affect the regulation of gene expression and the overall adaptability of the organism. Understanding the traits of Trinickia violacea strain DHOD12 is valuable for ecological insights, particularly in its role within microbial communities. Its Gram-negative classification suggests it may participate in interactions with other microorganisms, potentially influencing nutrient cycles and biogeochemical processes in its habitat. Further exploration of this strain could reveal its significance in ecological dynamics and its potential utility in biotechnological applications.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyBurkholderiaceae
GenusTrinickia
SpeciesTrinickia violacea
Strainstrain DHOD12

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Trinickia violacea strain DHOD12 chromosome 3, complete sequence.

Gene Summary

Adenine Count

21058 bp

Thymine Count

20619 bp

Guanine Count

32475 bp

Cytosine Count

31198 bp

Genome Length

105350 bp

Protein-coding Genes

90 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

3

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinFAZ95_RS37105Not AvailablePositive3338182 - 333943346053.0
transposaseFAZ95_RS40820Not AvailablePositive3339801 - 334024716589.9
is6 family transposaseFAZ95_RS37115Not AvailablePositive3341083 - 334181428229.2
hypothetical proteinFAZ95_RS37120Not AvailablePositive3341894 - 33420736744.45
zinc-ribbon domain-containing proteinFAZ95_RS37125Not AvailablePositive3343160 - 33433788160.72
outer membrane protein assembly factor bameFAZ95_RS37130Not AvailablePositive3343458 - 334399719454.1
is6 family transposaseFAZ95_RS37135Not AvailableNegative3344252 - 334498328229.2
lipocalin-like domain-containing proteinFAZ95_RS37140Not AvailableNegative3346328 - 334684618478.7
alpha/beta fold hydrolaseFAZ95_RS37145Not AvailableNegative3346929 - 334807741641.9
luxr family transcriptional regulatorFAZ95_RS37150Not AvailableNegative3348143 - 334886227134.5

Displaying genes 7511 – 7520 of 7824 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.