Trinickia violacea strain DHOD12

rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Burkholderiaceae

Genus

Trinickia

Description

Trinickia violacea strain DHOD12 is a Gram-negative bacterium characterized by its rod shape. It possesses a unique genomic structure, having three replicons, which may contribute to its genetic adaptability and stability. The strain is cataloged under several accessions, including NZ_CP040077.1, NZ_CP040078.1, and NZ_CP040079.1, indicating its availability in genetic databases for further research and analysis. These accessions provide a basis for studying its genomic characteristics and potential applications in various fields. The presence of three replicons in Trinickia violacea strain DHOD12 could be an important factor in its biological functions, potentially influencing its metabolic capabilities and response to environmental stressors. In many bacteria, the number of replicons can affect the regulation of gene expression and the overall adaptability of the organism. Understanding the traits of Trinickia violacea strain DHOD12 is valuable for ecological insights, particularly in its role within microbial communities. Its Gram-negative classification suggests it may participate in interactions with other microorganisms, potentially influencing nutrient cycles and biogeochemical processes in its habitat. Further exploration of this strain could reveal its significance in ecological dynamics and its potential utility in biotechnological applications.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyBurkholderiaceae
GenusTrinickia
SpeciesTrinickia violacea
Strainstrain DHOD12

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Trinickia violacea strain DHOD12 chromosome 3, complete sequence.

Gene Summary

Adenine Count

21058 bp

Thymine Count

20619 bp

Guanine Count

32475 bp

Cytosine Count

31198 bp

Genome Length

105350 bp

Protein-coding Genes

90 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

3

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
yfhl family 4fe-4s dicluster ferredoxinFAZ95_RS02370Not AvailablePositive546439 - 5466969336.15
histidinol-phosphate transaminaseFAZ95_RS02375Not AvailableNegative546788 - 54785538721.9
aminoacyl-trna hydrolaseFAZ95_RS02380Not AvailableNegative547916 - 54851822126.7
50s ribosomal protein l25/general stress protein ctcFAZ95_RS02390Not AvailableNegative548648 - 54926822130.6
ribose-phosphate pyrophosphokinaseFAZ95_RS02395Not AvailableNegative549432 - 55038834278.8
Trna-glnNot AvailableNot AvailablePositive550432 - 550508Not Available
4-(cytidine 5'-diphospho)-2-c-methyl-d-erythritol kinaseFAZ95_RS02405Not AvailableNegative550562 - 55144331675.9
lipoprotein insertase outer membrane protein lolbFAZ95_RS02410Not AvailableNegative551503 - 55213522677.9
tetratricopeptide repeat proteinFAZ95_RS02415Not AvailableNegative552135 - 55399167869.2
bifunctional dna-formamidopyrimidine glycosylase/dna-(apurinic or apyrimidinic site) lyaseFAZ95_RS02420Not AvailablePositive554079 - 55490930995.5

Displaying genes 601 – 610 of 7824 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.