Trinickia violacea strain DHOD12

rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Burkholderiaceae

Genus

Trinickia

Description

Trinickia violacea strain DHOD12 is a Gram-negative bacterium characterized by its rod shape. It possesses a unique genomic structure, having three replicons, which may contribute to its genetic adaptability and stability. The strain is cataloged under several accessions, including NZ_CP040077.1, NZ_CP040078.1, and NZ_CP040079.1, indicating its availability in genetic databases for further research and analysis. These accessions provide a basis for studying its genomic characteristics and potential applications in various fields. The presence of three replicons in Trinickia violacea strain DHOD12 could be an important factor in its biological functions, potentially influencing its metabolic capabilities and response to environmental stressors. In many bacteria, the number of replicons can affect the regulation of gene expression and the overall adaptability of the organism. Understanding the traits of Trinickia violacea strain DHOD12 is valuable for ecological insights, particularly in its role within microbial communities. Its Gram-negative classification suggests it may participate in interactions with other microorganisms, potentially influencing nutrient cycles and biogeochemical processes in its habitat. Further exploration of this strain could reveal its significance in ecological dynamics and its potential utility in biotechnological applications.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyBurkholderiaceae
GenusTrinickia
SpeciesTrinickia violacea
Strainstrain DHOD12

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Trinickia violacea strain DHOD12 chromosome 3, complete sequence.

Gene Summary

Adenine Count

21058 bp

Thymine Count

20619 bp

Guanine Count

32475 bp

Cytosine Count

31198 bp

Genome Length

105350 bp

Protein-coding Genes

90 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

3

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
b12-binding domain-containing radical sam proteinFAZ95_RS01480Not AvailablePositive354878 - 35667168623.6
penicillin-binding protein 1aFAZ95_RS01490Not AvailablePositive357559 - 35975181094.8
lea type 2 family proteinFAZ95_RS01495Not AvailablePositive360141 - 36063517496.0
leucine-rich repeat domain-containing proteinFAZ95_RS01500Not AvailableNegative360692 - 36195746054.6
hypothetical proteinFAZ95_RS01505Not AvailableNegative362237 - 36277919819.5
hypothetical proteinFAZ95_RS01510Not AvailableNegative362956 - 36341415235.1
aspartate/glutamate racemase family proteinFAZ95_RS01515Not AvailableNegative363966 - 36473928039.6
d-amino acid dehydrogenaseFAZ95_RS01520Not AvailableNegative364736 - 36598045446.4
branched-chain amino acid abc transporter substrate-binding proteinFAZ95_RS01525Not AvailablePositive366346 - 36754841658.6
branched-chain amino acid abc transporter permeaseFAZ95_RS01530Not AvailablePositive367585 - 36848432004.3

Displaying genes 421 – 430 of 7824 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.