Agrobacterium tumefaciens strain CFBP6625

Gram-negativeRodMotileAerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Rhizobiaceae

Genus

Agrobacterium

Description

Agrobacterium tumefaciens strain CFBP6625 is a Gram-negative, rod-shaped bacterium that exhibits mobility and possesses flagella. It is classified as an aerobic organism and thrives optimally at 25°C, falling within the mesophilic temperature range. This strain is notable for its ability to establish a free-living biotic relationship and has been identified in multiple habitats. CFBP6625 has a complex genetic structure with six replicons and is characterized by a double membrane system. It has a diverse range of hosts within the Viridiplantae kingdom, including economically significant plants such as Triticum aestivum (wheat), Solanum tuberosum (potato), Solanum lycopersicum (tomato), Oryza sativa (rice), Arabidopsis, and Glycine max (soybean), among others. One of the significant health implications associated with Agrobacterium tumefaciens strain CFBP6625 is its role in causing crown gall disease. This condition is marked by the formation of tumors on the infected plants, known as crown galls, which can adversely affect plant growth and yield. The presence of crown gall symptoms highlights the ecological impact this bacterium has on agricultural systems, potentially leading to economic losses in crop production. In summary, Agrobacterium tumefaciens strain CFBP6625, with its ability to infect a wide variety of plant hosts and induce disease, serves as a critical factor in understanding plant-microbe interactions and the management of plant health within agricultural ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyRhizobiaceae
GenusAgrobacterium
SpeciesAgrobacterium tumefaciens
Strainstrain CFBP6625

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Agrobacterium tumefaciens strain CFBP6625
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperature25
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Viridiplantae, Triticum aestivum, Solanum tuberosum
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Agrobacterium tumefaciens strain CFBP6625 plasmid pAtCFBP6625b,

Gene Summary

Adenine Count

81122 bp

Thymine Count

81403 bp

Guanine Count

112209 bp

Cytosine Count

112191 bp

Genome Length

386925 bp

Protein-coding Genes

385 genes

Non-Coding Genes

17 genes

# of Chromosomes/Plasmids

6

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
winged-helix domain-containing proteinCFBP6625_RS27050Not AvailablePositive202934 - 20361125710.5
hypothetical proteinCFBP6625_RS27055Not AvailableNegative203627 - 2038427567.88
response regulator transcription factorCFBP6625_RS27060Not AvailablePositive204091 - 20488529563.6
aminotransferase class i/ii-fold pyridoxal phosphate-dependent enzymeCFBP6625_RS27065Not AvailablePositive205012 - 20605537529.8
is6 family transposaseCFBP6625_RS27070Not AvailablePositive206111 - 20686329269.5
nucleotidyltransferase and hepn domain-containing proteinCFBP6625_RS27080Not AvailablePositive207312 - 20825036049.8
duf2218 domain-containing proteinCFBP6625_RS27085Not AvailablePositive208559 - 20890913017.7
hypothetical proteinCFBP6625_RS29000Not AvailableNegative209051 - 2091915540.9
helix-turn-helix transcriptional regulatorCFBP6625_RS27090Not AvailablePositive209624 - 20990810459.7
type ii toxin-antitoxin system hipa family toxinCFBP6625_RS27095Not AvailablePositive209898 - 21122047494.6

Displaying genes 241 – 250 of 5587 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

Health ConditionRelationReference
TumorsCausesPMC177831
Crown gall diseaseCausesPMC2241609
Crown gall diseaseCausesPMC2653234
Crown gall diseaseCausesPMC11575935
Crown and cane gall symptomsCausesPMC12602688
Crown and cane gallsCausesPMC12602688
Crown gall diseaseCausesPMC9343901
Crown gallCausesPMC12030312
Crown-gall diseaseCausesPMC7248198
Crown gall tumorsCausesPMC8087989

Displaying health effects 1 – 10 of 11 in total