Agrobacterium tumefaciens strain CFBP6625

Gram-negativeRodMotileAerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Rhizobiaceae

Genus

Agrobacterium

Description

Agrobacterium tumefaciens strain CFBP6625 is a Gram-negative, rod-shaped bacterium that exhibits mobility and possesses flagella. It is classified as an aerobic organism and thrives optimally at 25°C, falling within the mesophilic temperature range. This strain is notable for its ability to establish a free-living biotic relationship and has been identified in multiple habitats. CFBP6625 has a complex genetic structure with six replicons and is characterized by a double membrane system. It has a diverse range of hosts within the Viridiplantae kingdom, including economically significant plants such as Triticum aestivum (wheat), Solanum tuberosum (potato), Solanum lycopersicum (tomato), Oryza sativa (rice), Arabidopsis, and Glycine max (soybean), among others. One of the significant health implications associated with Agrobacterium tumefaciens strain CFBP6625 is its role in causing crown gall disease. This condition is marked by the formation of tumors on the infected plants, known as crown galls, which can adversely affect plant growth and yield. The presence of crown gall symptoms highlights the ecological impact this bacterium has on agricultural systems, potentially leading to economic losses in crop production. In summary, Agrobacterium tumefaciens strain CFBP6625, with its ability to infect a wide variety of plant hosts and induce disease, serves as a critical factor in understanding plant-microbe interactions and the management of plant health within agricultural ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyRhizobiaceae
GenusAgrobacterium
SpeciesAgrobacterium tumefaciens
Strainstrain CFBP6625

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Agrobacterium tumefaciens strain CFBP6625
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperature25
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Viridiplantae, Triticum aestivum, Solanum tuberosum
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Agrobacterium tumefaciens strain CFBP6625 plasmid pAtCFBP6625b,

Gene Summary

Adenine Count

81122 bp

Thymine Count

81403 bp

Guanine Count

112209 bp

Cytosine Count

112191 bp

Genome Length

386925 bp

Protein-coding Genes

385 genes

Non-Coding Genes

17 genes

# of Chromosomes/Plasmids

6

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
ycjf family proteinCFBP6625_RS05240Not AvailableNegative1028727 - 102980638212.6
ycjx family proteinCFBP6625_RS05245Not AvailableNegative1029803 - 103128154133.8
sixa phosphatase family proteinCFBP6625_RS05250Not AvailableNegative1031409 - 103188517306.2
rna polymerase-binding protein dksaCFBP6625_RS05255Not AvailablePositive1032190 - 103260916122.8
flagellar biosynthetic protein flioCFBP6625_RS05260Not AvailableNegative1032729 - 103396443792.5
cell cycle histidine kinase cckaCFBP6625_RS05270Not AvailablePositive1034634 - 103721694714.0
atp-dependent clp protease adapter clpsCFBP6625_RS05275Not AvailablePositive1037507 - 103786013531.4
atp-dependent clp protease atp-binding subunit clpaCFBP6625_RS05280Not AvailablePositive1037871 - 104038791937.8
azlc family abc transporter permeaseCFBP6625_RS05285Not AvailablePositive1040457 - 104121527004.8
azld domain-containing proteinCFBP6625_RS05290Not AvailablePositive1041212 - 104155612320.5

Displaying genes 1551 – 1560 of 5587 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

Health ConditionRelationReference
TumorsCausesPMC177831
Crown gall diseaseCausesPMC2241609
Crown gall diseaseCausesPMC2653234
Crown gall diseaseCausesPMC11575935
Crown and cane gall symptomsCausesPMC12602688
Crown and cane gallsCausesPMC12602688
Crown gall diseaseCausesPMC9343901
Crown gallCausesPMC12030312
Crown-gall diseaseCausesPMC7248198
Crown gall tumorsCausesPMC8087989

Displaying health effects 1 – 10 of 11 in total