Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Hyphomicrobiales
Family
Rhizobiaceae
Genus
Agrobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Hyphomicrobiales |
| Family | Rhizobiaceae |
| Genus | Agrobacterium |
| Species | Agrobacterium tumefaciens |
| Strain | strain CFBP6625 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Viridiplantae, Triticum aestivum, Solanum tuberosum |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Agrobacterium tumefaciens strain CFBP6625 plasmid pAtCFBP6625b,
Gene Summary
Adenine Count
81122 bp
Thymine Count
81403 bp
Guanine Count
112209 bp
Cytosine Count
112191 bp
Genome Length
386925 bp
Protein-coding Genes
385 genes
Non-Coding Genes
17 genes
# of Chromosomes/Plasmids
6
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| abc transporter atp-binding protein | CFBP6625_RS04475 | Not Available | Positive | 876916 - 877926 | 37477.7 |
| abc transporter substrate-binding protein | CFBP6625_RS04480 | Not Available | Positive | 878166 - 879659 | 53370.7 |
| heavy-metal-associated domain-containing protein | CFBP6625_RS04485 | Not Available | Negative | 880101 - 880355 | 8502.01 |
| trkh family potassium uptake protein | CFBP6625_RS04490 | Not Available | Negative | 880463 - 881920 | 52391.8 |
| threonine ammonia-lyase | CFBP6625_RS04495 | Not Available | Positive | 882001 - 883275 | 46630.4 |
| hlyu family transcriptional regulator | CFBP6625_RS04500 | Not Available | Positive | 883352 - 883660 | 11109.2 |
| sensor domain-containing diguanylate cyclase | CFBP6625_RS04505 | Not Available | Positive | 883780 - 885045 | 46962.9 |
| fmn-dependent nadh-azoreductase | CFBP6625_RS04510 | Not Available | Negative | 885085 - 885702 | 21371.6 |
| lysr family transcriptional regulator | CFBP6625_RS04515 | Not Available | Positive | 885852 - 886820 | 34979.2 |
| duf2087 domain-containing protein | CFBP6625_RS04520 | Not Available | Positive | 887208 - 887762 | 21031.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Tumors | Causes | PMC177831 |
| Crown gall disease | Causes | PMC2241609 |
| Crown gall disease | Causes | PMC2653234 |
| Crown gall disease | Causes | PMC11575935 |
| Crown and cane gall symptoms | Causes | PMC12602688 |
| Crown and cane galls | Causes | PMC12602688 |
| Crown gall disease | Causes | PMC9343901 |
| Crown gall | Causes | PMC12030312 |
| Crown-gall disease | Causes | PMC7248198 |
| Crown gall tumors | Causes | PMC8087989 |


