Citrobacter portucalensis strain Effluent_1

Gram-negativeRod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Citrobacter

Description

Citrobacter portucalensis strain Effluent_1 is a Gram-negative bacterium characterized by its rod shape and the presence of flagella, which contributes to its motility. This strain has a single replicon, indicating a streamlined genomic structure that can facilitate efficient replication and adaptation in its environment. Its genomic data is cataloged under the accession number NZ_CP039327.1, providing a reference for further studies and comparisons with other strains. As a member of the Citrobacter genus, which is known for its versatility in various habitats, C. portucalensis strain Effluent_1 may play a role in nutrient cycling and the degradation of organic matter, particularly in effluent environments where it was isolated. The ability of this bacterium to thrive in such conditions suggests a potential for bioremediation applications, where its metabolic capabilities could be harnessed to treat wastewater or contaminated sites. The presence of flagella not only enhances its motility but may also confer an ecological advantage in dynamic environments, allowing it to navigate towards nutrient sources or evade adverse conditions. Overall, Citrobacter portucalensis strain Effluent_1 exemplifies the adaptability and ecological importance of bacteria in managing and mitigating the impacts of effluent discharge on natural ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusCitrobacter
SpeciesCitrobacter portucalensis
Strainstrain Effluent_1

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Citrobacter portucalensis strain Effluent_1
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
Habitathuman gut microbiome
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Citrobacter portucalensis strain Effluent_1 chromosome, complete

Gene Summary

Adenine Count

1198898 bp

Thymine Count

1203576 bp

Guanine Count

1305792 bp

Cytosine Count

1309829 bp

Genome Length

5018095 bp

Protein-coding Genes

4587 genes

Non-Coding Genes

277 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
alpha-d-ribose 1-methylphosphonate 5-phosphate c-p-lyase phnjE7703_RS22435Not AvailablePositive4567743 - 456853429828.7
phosphonate c-p lyase system protein phnkE7703_RS22440Not AvailablePositive4568531 - 456928927755.6
phosphonate c-p lyase system protein phnlE7703_RS22445Not AvailablePositive4569901 - 457058725086.3
alpha-d-ribose 1-methylphosphonate 5-triphosphate diphosphataseE7703_RS22450Not AvailablePositive4570584 - 457172042050.0
ribose 1,5-bisphosphokinaseE7703_RS22455Not AvailablePositive4571723 - 457227720393.5
aminoalkylphosphonate n-acetyltransferaseE7703_RS22460Not AvailablePositive4572264 - 457269816222.4
phosphonate metabolism protein phnpE7703_RS22465Not AvailablePositive4572707 - 457346528054.9
type ii toxin-antitoxin system phd/yefm family antitoxinE7703_RS22470Not AvailablePositive4573544 - 45737959216.04
type ii toxin-antitoxin system rele family toxinE7703_RS22475Not AvailablePositive4573792 - 457407911165.7
ddrrrql repeat protein yjdpE7703_RS22480Not AvailableNegative4574076 - 457440513451.3

Displaying genes 4441 – 4450 of 4864 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.