Rhodococcus sp. PAMC28705

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Mycobacteriales

Family

Nocardiaceae

Genus

Rhodococcus

Description

Rhodococcus sp. PAMC28705 is a bacterial strain characterized by the presence of flagella, which may contribute to its motility and ecological interactions. It possesses a single replicon, indicating a streamlined genomic structure that may facilitate efficient replication and adaptation in its environment. The strain is cataloged under the accession number NZ_CP039254.1, which provides a reference for its genomic sequence and related research. Rhodococcus species are known for their versatile metabolic capabilities, particularly in the degradation of various organic compounds, including pollutants. Although specific metabolic traits of PAMC28705 are not detailed here, the presence of flagella suggests potential environmental adaptability, allowing the bacterium to explore diverse habitats and utilize available resources effectively. The ecological significance of Rhodococcus sp. PAMC28705 may lie in its role in bioremediation processes, particularly in environments contaminated with organic pollutants. Its motility, facilitated by flagella, could enhance its ability to colonize contaminated sites and contribute to the breakdown of harmful substances. Thus, Rhodococcus sp. PAMC28705 may serve as an important organism for studies focused on microbial ecology and environmental biotechnology.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderMycobacteriales
FamilyNocardiaceae
GenusRhodococcus
SpeciesRhodococcus sp. PAMC28705
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Rhodococcus sp. PAMC28705 chromosome, complete genome.

Gene Summary

Adenine Count

892804 bp

Thymine Count

900106 bp

Guanine Count

1467365 bp

Cytosine Count

1467088 bp

Genome Length

4727363 bp

Protein-coding Genes

4279 genes

Non-Coding Genes

61 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
inner membrane protein yhjdE5769_RS10405Not AvailablePositive2274818 - 227584636201.8
d-alanyl-d-alanine carboxypeptidase family proteinE5769_RS10410Not AvailableNegative2275856 - 227715744326.4
3d-(3,5/4)-trihydroxycyclohexane-1,2-dione acylhydrolase (decyclizing)E5769_RS10415Not AvailableNegative2277248 - 227919769048.6
5-deoxy-glucuronate isomeraseE5769_RS10420Not AvailableNegative2279194 - 228009031982.9
5-dehydro-2-deoxygluconokinaseE5769_RS10425Not AvailableNegative2280179 - 228113833802.3
tim barrel proteinE5769_RS10430Not AvailableNegative2281135 - 228205532864.1
gfo/idh/moca family oxidoreductaseE5769_RS10435Not AvailableNegative2282067 - 228307435349.1
succinate dehydrogenase iron-sulfur subunitE5769_RS10440Not AvailableNegative2283220 - 228399928785.7
succinate dehydrogenase flavoprotein subunitE5769_RS10445Not AvailableNegative2284001 - 228575264709.0
succinate dehydrogenase hydrophobic membrane anchor subunitE5769_RS10450Not AvailableNegative2285769 - 228622417352.4

Displaying genes 2101 – 2110 of 4340 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.