Microbacterium sediminis strain YLB-01

Rod

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Micrococcales

Family

Microbacteriaceae

Genus

Microbacterium

Description

Microbacterium sediminis strain YLB-01 is characterized as a rod-shaped bacterium. This strain has a unique genomic structure comprised of three replicons, which may suggest a complex regulatory or functional system within its genetic makeup. The specific accession numbers associated with this strain are NZ_CP038256.1, NZ_CP038257.1, and LXMD00000000.1, indicating the availability of its genomic data in public databases for further research and exploration. The rod shape of M. sediminis strain YLB-01 is significant in the context of its ecological roles and interactions within its environment. Rod-shaped bacteria often possess advantages in nutrient acquisition and colonization due to their surface area-to-volume ratio, which can facilitate effective nutrient uptake. This morphological trait may contribute to the strain's adaptability in diverse habitats, particularly in sediment environments where it might play a role in biogeochemical cycles. Overall, the traits of Microbacterium sediminis strain YLB-01, particularly its rod shape and genomic structure, provide insights into its potential ecological functions. Understanding these characteristics can enhance our knowledge of microbial communities in sediment ecosystems, where such bacteria may contribute to nutrient cycling and overall ecosystem health.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderMicrococcales
FamilyMicrobacteriaceae
GenusMicrobacterium
SpeciesMicrobacterium sediminis
Strainstrain YLB-01

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Microbacterium sediminis strain YLB-01 Scaffold9_1, whole genome

Gene Summary

Adenine Count

386383 bp

Thymine Count

389502 bp

Guanine Count

989527 bp

Cytosine Count

994549 bp

Genome Length

2759961 bp

Protein-coding Genes

2529 genes

Non-Coding Genes

48 genes

# of Chromosomes/Plasmids

3

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
bile acid:sodium symporterE3O41_RS07565Not AvailablePositive1595483 - 159643934096.8
cation diffusion facilitator family transporterE3O41_RS07570Not AvailableNegative1596515 - 159754036243.1
arsr/smtb family transcription factorE3O41_RS07575Not AvailableNegative1597537 - 159790813727.2
hypothetical proteinE3O41_RS07580Not AvailableNegative1598007 - 159847115946.0
yifb family mg chelatase-like aaa atpaseE3O41_RS07585Not AvailableNegative1598468 - 159998552784.7
yran family proteinE3O41_RS07590Not AvailableNegative1599982 - 160034413612.2
duf2469 domain-containing proteinE3O41_RS07595Not AvailablePositive1600481 - 160080713276.4
ribonuclease hiiE3O41_RS07600Not AvailableNegative1600818 - 160147723175.7
signal peptidase iE3O41_RS07605Not AvailableNegative1601474 - 160221426686.7
50s ribosomal protein l19E3O41_RS07610Not AvailableNegative1602371 - 160272112972.8

Displaying genes 4251 – 4260 of 5404 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

212 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000272(E)-4-coumarateC9H7O3Chemical structure of (E)-4-coumarateNot available
Average163.1501Da
Monoisotopic163.0395191Da
BASm0000275keto-D-sorboseC6H12O6Chemical structure of keto-D-sorboseNot available
Average180.1559Da
Monoisotopic180.0633881Da
BASm0000277keto-L-sorboseC6H12O6Chemical structure of keto-L-sorboseNot available
Average180.1559Da
Monoisotopic180.0633881Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da

Displaying 1–10 of 212 metabolites

Health Effects

No health effects information available for this bacterium.