Microbacterium sediminis strain YLB-01

Rod

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Micrococcales

Family

Microbacteriaceae

Genus

Microbacterium

Description

Microbacterium sediminis strain YLB-01 is characterized as a rod-shaped bacterium. This strain has a unique genomic structure comprised of three replicons, which may suggest a complex regulatory or functional system within its genetic makeup. The specific accession numbers associated with this strain are NZ_CP038256.1, NZ_CP038257.1, and LXMD00000000.1, indicating the availability of its genomic data in public databases for further research and exploration. The rod shape of M. sediminis strain YLB-01 is significant in the context of its ecological roles and interactions within its environment. Rod-shaped bacteria often possess advantages in nutrient acquisition and colonization due to their surface area-to-volume ratio, which can facilitate effective nutrient uptake. This morphological trait may contribute to the strain's adaptability in diverse habitats, particularly in sediment environments where it might play a role in biogeochemical cycles. Overall, the traits of Microbacterium sediminis strain YLB-01, particularly its rod shape and genomic structure, provide insights into its potential ecological functions. Understanding these characteristics can enhance our knowledge of microbial communities in sediment ecosystems, where such bacteria may contribute to nutrient cycling and overall ecosystem health.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderMicrococcales
FamilyMicrobacteriaceae
GenusMicrobacterium
SpeciesMicrobacterium sediminis
Strainstrain YLB-01

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Microbacterium sediminis strain YLB-01 chromosome, complete

Gene Summary

Adenine Count

394160 bp

Thymine Count

394234 bp

Guanine Count

1002337 bp

Cytosine Count

1001464 bp

Genome Length

2792195 bp

Protein-coding Genes

2625 genes

Non-Coding Genes

54 genes

# of Chromosomes/Plasmids

3

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinA7J15_11000Q9XTA2Positive76 - 214274721.4
atp-binding proteinA7J15_11005O07635Negative2211 - 356948910.5
aminotransferase class vA7J15_11010Not AvailableNegative3768 - 488939258.5
isoprenyl transferaseA7J15_11015Q82IC1Negative4938 - 572329019.4
hemolysin iiiA7J15_11020P9WFN6Positive5806 - 652825982.5
hypothetical proteinA7J15_11025Not AvailableNegative6530 - 683210735.7
transcriptional regulatorA7J15_11030Not AvailablePositive6899 - 729113872.2
transcription elongation factor greaA7J15_11035Q82I57Positive7368 - 785017210.1
threonine ammonia-lyaseA7J15_11040Q74FW6Negative7993 - 924343251.7
ai-2e family transporterA7J15_11045Not AvailableNegative9246 - 1047543196.9

Displaying genes 1 – 10 of 5404 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.