Rhodococcus ruber strain R1

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Mycobacteriales

Family

Nocardiaceae

Genus

Rhodococcus

Description

Rhodococcus ruber strain R1 is a Gram-positive bacterium predominantly found in soil habitats. This species is characterized by its possession of flagella, which may contribute to its motility in the soil environment. R. ruber strain R1 contains two replicons, indicating a potentially complex genomic organization that may enable it to adapt to various environmental conditions. The strain is documented under two accessions: NZ_CP038032.2 and NZ_CP038030.2, which provide genetic and genomic information pertinent to its classification and study. The presence of flagella suggests that R. ruber strain R1 may exhibit enhanced mobility, allowing it to navigate through the soil matrix, potentially accessing nutrients or interacting with other soil microorganisms. This bacterium's ecological role in soil environments could be significant, especially in terms of biogeochemical cycling and interactions with other soil organisms. Its ability to move and adapt may influence nutrient availability and contribute to soil health and fertility. Understanding the traits of Rhodococcus ruber strain R1 can provide insights into its function and importance within the soil ecosystem, highlighting the intricate relationships present in microbial communities.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderMycobacteriales
FamilyNocardiaceae
GenusRhodococcus
SpeciesRhodococcus ruber
Strainstrain R1

Profile

Physiology
Gram staining propertiesPositive
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatSoil
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Rhodococcus ruber strain R1 plasmid unnamed2, complete sequence.

Gene Summary

Adenine Count

4793 bp

Thymine Count

5098 bp

Guanine Count

11390 bp

Cytosine Count

11735 bp

Genome Length

33016 bp

Protein-coding Genes

33 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinE2561_RS02510Not AvailablePositive538719 - 53947125690.6
had-ib family hydrolaseE2561_RS02515Not AvailableNegative539899 - 54074130417.4
septum site-determining protein ssdE2561_RS02520Not AvailablePositive541086 - 54215936011.2
tada family conjugal transfer-associated atpaseE2561_RS02525Not AvailablePositive542156 - 54332841232.7
type ii secretion system f family proteinE2561_RS02530Not AvailablePositive543325 - 54412526836.9
type ii secretion system f family proteinE2561_RS02535Not AvailablePositive544089 - 54472121024.2
duf4244 domain-containing proteinE2561_RS02540Not AvailablePositive544764 - 5449676726.15
tade family type iv pilus minor pilinE2561_RS02545Not AvailablePositive544985 - 54529910507.8
rv3654c family tade-like proteinE2561_RS02550Not AvailablePositive545296 - 54564011457.8
dead/deah box helicaseE2561_RS02555Not AvailableNegative545648 - 54799382842.3

Displaying genes 541 – 550 of 4944 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.